Table 1 Assembly and annotation statistics of the chloroplast genomes from six Vaccinium species.
cpDNA | SHB | Rabbiteye | NHB | Lowbush | Bilberry | Cranberry |
|---|---|---|---|---|---|---|
Species | V. corymbosum hybrids | V. virgatum | V. corymbosum | V. angustifolium | V. myrtillus | V. macrocarpon |
Genotype | Arcadia | Ochlockonee | Draper | Brunswick | OU-L2 | Stevens |
Sequencing | PacBio/Illumina | PacBio/Illumina | Illumina | Illumina | Illumina | PacBio |
Assembler | Canu | Canu | Novoplasty | Novoplasty | Spades/CAP3 | Canu |
Genome size (bp) | 191,378 | 195,878 | 186,057 | 182,334 | 191,744 | 176,095 |
Number of gaps (stretch of Ns) | 0 | 0 | 2 | 5 | 16 | 0 |
LSC size (bp) | 106,385 | 106,427 | 105,714 | 107,607 | 107,134 | 104,591 |
SSC size (bp) | 3037 | 3035 | 3027 | 2997 | 3008 | 3028 |
IR size (bp) | 40,978 | 43,208 | 38,658 | 35,865 | 40,801 | 34,238 |
Total number of genes* | 112 (136) | 112 (136) | 112 (136) | 112 (139) | 112 (145) | 112 (134) |
Protein-coding genes* | 74 (85) | 74 (85) | 74 (85) | 74 (85) | 74 (89) | 74 (85) |
tRNA genes* | 34 (43) | 34 (43) | 34 (43) | 34 (46) | 34 (48) | 34 (41) |
rRNA genes* | 4 (8) | 4 (8) | 4 (8) | 4 (8) | 4 (8) | 4 (8) |
GC% | 36.8 | 36.8 | 36.8 | 36.8 | 36.6 | 36.8 |
Accession Number | OM791342 | OM791343 | BK061167 | OM791344 | OM809159 | MK715447.1 |
Reference | This work | This work | This work | This work | This work | Diaz-Garcia et al. 2019 |
