Table 1 General genomic features of the E. faecalis strains BFFF11, BFF1B1 and BFPS6 obtained from RAST and PATRIC analysis.
Parameters | Subsystem statistics | ||
|---|---|---|---|
Genome feature | BFF1B1 | BFFF11 | BFPS6 |
Size (bp) | 2,761,629 | 3,067,042 | 2,868,292 |
GC content (%) | 37.6 | 37.4 | 37.5 |
N50 | 384,233 | 343,888 | 270,331 |
L50 | 2 | 4 | 2 |
No. of coding sequences (CDs) | 2588 | 2870 | 2743 |
No. of RNA | 63 | 66 | 60 |
No. of subsystems | 353 | 357 | 250 |
Fine Consistency | 97.3 | 97.4 | 97.3 |
CDS | 2631 | 2949 | 2745 |
Repeat region | 87 | 111 | 104 |
tRNA | 51 | 55 | 56 |
rRNA | 9 | 6 | 5 |
Protein feature | |||
Proteins with functional assignments1 | 2131 | 2283 | 2206 |
Hypothetical proteins1 | 500 | 666 | 539 |
Proteins with GO assignments | 540 | 581 | 558 |
Proteins with genus-specific family assignments2 | 2556 | 2777 | 2688 |
Proteins with cross-genus family (PGfam) assignments2 | 2582 | 2822 | 2716 |
Speciality genes | |||
Virulence factor | 33 | 36 | 34 |
Transporter | 33 | 54 | 43 |
Drug target | 11 | 11 | 11 |
Antibiotic resistance | 32 | 34 | 34 |
