Table 2 Acquired antibiotic resistance genes identified in the strains of E. faecalis obtained by ARG-ANNOT Nt, Resfinder and CARD.

From: Virulence and antibiotic-resistance genes in Enterococcus faecalis associated with streptococcosis disease in fish

Antibiotic resistance genes	BFFF11	BFF1B1	BFPS6	Antibiotic resistance group	Sources (NCBI accession No./Pubmed)
efrA^{c, p}	+	+	+	Macrolide-lincosamide-streptogramin, rifamycin	CDO61513.1
efrB^p	+	+	+	Macrolide-lincosamide-streptogramin, rifamycin	CDO61516.1
YkkCD^p	+	+	+	Tetracyclines, aminoglycosides, phenicol	10,735,877
LiaR^p	+	+	+	Daptomycin	AFK58562.1
LiaS^p	+	+	+	Daptomycin	21,899,450;26,020,679
LiaF^p	+	+	+	Daptomycin	21,899,450;26,020,679
MprF^p	+	+	+	Daptomycin	19,289,517;16,723,576
GdpD^p	+	+	+	Daptomycin	21,899,450
PgsA^p	+	+	+	Daptomycin	22,238,576
rpoC^p	+	+	+	Daptomycin	16,723,576
rpoB	+	+	+	Rifamycins	3,050,121
rho^p	+	+	+	Bicyclomycins	8,466,900
EF-G^p	+	+	+	Fusidic acid	17,980,694
Alr^p	+	+	+	D-cycloserine	19,748,470;24,303,782
Ddl^p	+	+	+	D-cycloserine	24,303,782;24,033,232
EF-Tu^p	+	+	+	Elfamycins	364,475;9,678,602
MurA^p	+	+	+	Fosfomycin	8,994,972
folA, Dfr^p	+	+	+	Trimethoprim, Diaminopyrimidines	20,169,085;25,288,078
Iso-tRNA^p	+	+	+	Mupirocin	7,929,087
S12p^p	+	+	+	Streptomycin	7,934,937
gidB^p	+	+	+	Streptomycin	17,238,915
kasA^p	+	+	+	Isoniazid, triclosan	10,428,945
S10p^p	+	+	+	Tetracyclines, glycylcyclines	26,124,155
folP^p	+	+	+	Sulfonamides	15,673,783
gyrA^p	+	+	+	Fluoroquinolones quinolones quinolines	9,293,187
gyrB^p	+	+	+	Fluoroquinolones quinolones quinolines, aminocoumarin	21,693,461;22,279,180;9,293,187
RlmA(II)^p	+	+	+	Macrolides, lincosamides	12,514,124;18,406,425
FabK^p	+	+	+	Triclosan	10,910,344
inhA, fabI^p	+	+	+	Isoniazid, ethionamide, triclosan	18,193,820;10,869,170;8,284,673
VanG-type^p	+	+	+	Vancomycin
lsa(A)^{a, r, p}	+	+	+	Macrolide-lincosamide-streptogramin	AY225127
mph(D)^{a, p}	+	+	+	Macrolide-lincosamide-streptogramin	NC_017312
amp(S)^a	+	+	+	Beta-lactamases	NC_014932
dfr(E)^{a, c, p}	+	+	+	Trimethoprim	NG_055770, AAD01867.1
tet(M)^{a, r}	–	–	+	Tetracycline	DQ534550
tet(L)^{a, r}	–	–	+	Tetracycline	FN435329
tet(S)^a	–	–	+	Tetracycline	L09756
tet(45)^{a, c}	–	–	+	Tetracycline	NG_048147

Here, a, r, c and p denote the gene identified by using the database ARG-ANNOT Nt, Resfinder, CARD and PATRIC, respectively. + and – indicate the gene presence and absence in the genome of the respective strains, respectively.

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Table 2 Acquired antibiotic resistance genes identified in the strains of E. faecalis obtained by ARG-ANNOT Nt, Resfinder and CARD.

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