Table 2 Example comparison of simulation values versus gene expression data1.

From: Software JimenaE allows efficient dynamic simulations of Boolean networks, centrality and system state analysis

Protein

Jimena

Gene Expression

Start

End

logFC

logFC

A

0.100

0.500

0.699

0.750

B

0.001

0.100

2.000

2.500

C

0.500

0.090

-0.745

-1.000

D

0.900

0.100

-0.954

-1.000

  1. 1The logFC value from Jimena was calculated as the logarithmic value of a nodes ratio from its initial value divided by its value at the end of the simulation and (log(xend/xstart)). Thus both different results become comparable.
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