Table 2 Log fold change value of genes associated with plant growth promotion, root system architecture, defense metabolism, phytohormones, and phosphate transport in HA, RAR, and HA + RAR treatments.
Locus identifier | Gene | HA | RAR | HA + RAR | |
|---|---|---|---|---|---|
Log fold change | |||||
Plant growth promotion | AT5G05730 | ASA1, anthranilate synthase 1 | − 0.60502 | 0.233222 | − 1.19295 |
AT4G14560 | IAA1 | − 0.45933 | 1.245183 | − 0.31336 | |
AT2G25000 | WRYK60 | − 0.11835 | 0.67778 | 0.178139 | |
AT3G56400 | WRKY70 | − 1.00746 | 0.907445 | − 1.36474 | |
AT1G21250 | WAK1 | 0.320022 | 3.180495 | 1.194565 | |
AT3G45140 | jasmonic acid (JA) LOX2 | 1.612366 | − 1.81294 | 1.884971 | |
AT1G05030 | Carbohydrate metabolism | 0.174888 | − 0.33848 | 0.290582 | |
AT1G06730 | Plastid nucleoside kinase | 0.123424 | − 0.08761 | 0.056039 | |
AT1G53730 | STRUBBELIG-receptor family 6 | 0.025972 | 0.15064 | 0.160056 | |
AT1G12890 | Transcription factor | − 0.27459 | 1.217637 | 0.556539 | |
AT1G01260 | Transcription factor | 0.140424 | − 0.24861 | − 0.11045 | |
AT5G63890 | Histidinol dehydrogenase | 0.100673 | 0.302311 | 0.037689 | |
AT3G23890 | Topoisomerase II | 0.511329 | 1.067717 | 1.130213 | |
AT2G46370 | Jasmonate-amido synthetase | 0.022017 | − 0.02026 | 0.01576 | |
AT5G20850 | RAD51 | 0.563679 | 1.213952 | 1.086052 | |
AT4G36110 | SAUR9 | − 1.23748 | 0.222742 | − 2.10603 | |
AT5G17220 | Glutathione S-transferase | 2.265442 | 2.553179 | 2.069202 | |
AT1G74930 | ERF/AP2 transcription factor family | 1.081301 | 0.158679 | 1.217591 | |
AT4G26200 | Ethylene biosynthesis genes | 0.36849 | − 0.70514 | 0.486748 | |
Root system architecture | AT1G79700 | AP2/ERF-type transcriptional activator | − 1.33638 | 0.487252 | − 0.13305 |
AT1G23010 | Low phosphate root 1 | 0.132059 | 0.587806 | 0.432539 | |
AT4G28610 | PHR1 | 0.161888 | 0.028235 | − 0.06149 | |
AT3G03710 | Chloroplast polynucleotide phosphorylase | 0.03284 | − 0.19015 | 0.399371 | |
AT3G25710 | Helix-loop-helix transcription factor | 0.074142 | − 0.61421 | − 0.39981 | |
AT5G21040 | F box protein | 0.091412 | − 0.09987 | − 0.04077 | |
AT5G42810 | Inositol-pentakisphosphate 2-kinase | 0.335513 | 0.328126 | 0.4272 | |
AT3G20630 | Ubiquitin-specific protease | − 0.02404 | − 0.11438 | 0.093818 | |
AT1G27740 | Root hair defective like | − 0.16931 | 0.158572 | − 0.16314 | |
AT1G13620 | Root meristem growth factor− 2 | 0.383748 | 1.090409 | 0.669725 | |
AT2G04025 | Root meristem growth factor− 3 | 0.561811 | 0.888145 | 1.084354 | |
AT5G60810 | Root meristem growth factor− 1 | 1.036245 | 1.525388 | 1.825072 | |
AT3G07360 | E3 ligase 9 | 0.190537 | 0.042808 | 0.027918 | |
AT1G65800 | Receptor Kinase 2 | − 0.24397 | 0.69488 | 0.542802 | |
AT5G21040 | F box motifs | 0.091412 | − 0.09987 | − 0.04077 | |
AT1G66470 | Root hair defective 6 | 0.372088 | 0.977157 | 1.129053 | |
AT1G01380 | ETC1 | 1.357817 | − 0.46166 | 0.557949 | |
Defense | AT3G12500 | Basic chitinase | − 0.79084 | 0.580785 | − 0.61569 |
AT2G43590 | Putative endochitinase | − 4.26441 | 2.12599 | − 3.67553 | |
AT3G49120 | Putative peroxidase | − 1.41458 | 0.499832 | − 0.9197 | |
AT5G64100 | Putative peroxidase | − 1.15536 | 0.835064 | − 0.52223 | |
AT4G19810 | Chitinase | − 0.05348 | 0.337477 | 0.176733 | |
AT1G72260 | Thionin | 0.627182 | − 0.00836 | − 6.34483 | |
AT3G50970 | Dehydrin Xero2 | − 0.08879 | 0.755893 | − 0.48026 | |
AT4G25780 | Putative pathogenesis-related protein | 1.644367 | 0.672576 | 1.285413 | |
AT5G47910 | Respiratory oxidase oxidase protein | 0.468684 | − 1.20605 | 0.162101 | |
AT5G39580 | Peroxidase | − 0.77574 | 1.265149 | − 0.70767 | |
AT5G39720 | Avirulence responsive protein | 1.358477 | 1.700944 | 2.177848 | |
AT5G17220 | Glutathione S-transferase, putative | 2.265442 | 2.553179 | 2.069202 | |
AT3G47540 | Chitinase | − 0.29663 | 0.75535 | − 0.44857 | |
AT1G19200 | Senescence-associated protein | 1.467621 | 1.319232 | 1.296234 | |
AT3G09940 | Monodehydroascorbate reductase | 0.813197 | − 0.67246 | 0.325767 | |
AT1G69080 | Universal stress protein | 0.879286 | − 0.41984 | 0.797882 | |
AT1G08830 | superoxide dismutase | 0.26508 | − 0.26706 | 0.026401 | |
Phytohormones | AT1G68320 | MYB62 | − 0.91856 | 0.254571 | 0.016459 |
AT5G13080 | WRKY75 | − 1.41862 | 0.111279 | − 1.72453 | |
AT1G68320 | MYB62 | − 0.91856 | 0.254571 | 0.016459 | |
AT2G47190 | MYB2 | 0.430055 | − 1.44589 | 0.386696 | |
AT3G62980 | AtTIR1, Transport inhibitor response | 0.111033 | 0.27616 | 0.469989 | |
AT1G19220 | Auxin response factor 19 | 0.731804 | − 0.84521 | 0.568221 | |
AT2G27050 | Ethylene-insensitive3-like1 | 0.087121 | 0.276828 | 0.233629 | |
AT2G01830 | Cytokinin response 1 | − 0.0748 | 0.270271 | 0.243102 | |
AT5G67030 | Zeaxanthin epoxidase | 0.1306 | − 0.02059 | 0.188658 | |
AT4G26080 | ABA insensitive 1 | − 0.34884 | 0.677509 | − 0.07961 | |
AT5G57050 | ABA signal transduction | − 0.10187 | 1.476148 | 0.468082 | |
Phosphate transporters | AT2G38940 | PHT1;4; Inorganic phosphate transporter | 1.574022 | 0.534836 | 1.95555 |
AT5G20150 | SPX domaincontaining proteins | 3.249601 | 1.643516 | 3.192507 | |
AT2G26660 | SPX domaincontaining proteins | 0.907458 | 0.416665 | 0.911567 | |
AT1G68740 | PHO1 | 1.962392 | 0.154712 | 1.761031 | |
AT5G43360 | PHT1;3 | 7.743493 | 0 | 9.22805 | |
AT3G47420 | Glycerol-3-P transporter | 2.725013 | 0.968898 | 2.280317 | |
AT5G43370 | PHT1;2 | 4.763233 | 0.20171 | 5.615784 | |
AT3G52190 | PHF1 | 1.362951 | 0.529231 | 1.240638 | |
AT2G32830 | PHT1;5 | 1.930059 | 1.704908 | 1.366535 | |
AT5G54800 | Glucose-6-phosphate/phosphate translocator | 0.135257 | 0.188966 | − 0.0262 | |
AT5G43370 | PHT2 | 4.763233 | 0.20171 | 5.615784 | |
AT5G43350 | PHT1;1 | 1.397895 | − 0.60161 | 1.491866 | |
AT1G76430 | PHT1;9 | 0.196505 | − 0.78779 | 0.289093 | |
AT1G20860 | PHT1;8 | 2.288292 | 1.475084 | 2.466618 | |
AT1G61800 | PT2 | 0.768295 | 5.129416 | 4.814035 | |
AT2G32830 | PHT1;5 | 1.930059 | 1.704908 | 1.366535 | |
