Figure 4 | Scientific Reports

Figure 4

From: Characterization of rumen microbiome and metabolome from oro-esophageal tubing and rumen cannula in Holstein dairy cows

Figure 4

Principal coordinate analysis (PCoA) of the bacterial community composition using: (A) prevalence interval for microbiome evaluation (PIME) filtered data to remove noise from taxa not prevalent within sample groups; (B) using all microbial taxa (ASV) from centered-log ratio normalization; and the latter (C) at the phylum, and (D) genus taxonomy levels. Statistical differences for permutational multivariate analysis of variance (PERMANOVA) were declared at P ≤ 0.05.

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