Table 4 Main characteristics of employed methods to assess an ISN’s significance.
From: Edge and modular significance assessment in individual-specific networks
Method | Edge-assessment | Module-assessment | Parameters to tune | Assumptions | p-value | Fast description |
---|---|---|---|---|---|---|
LOO-ISN | TRUE | TRUE | Rep: number of repetition | Multivariate edge normality | TRUE | A null distribution is computed based on bootstrap resampling assuming Normality—LOO procedure— Aggregation method: sum of the absolute difference |
MultiLOO-ISN | TRUE | TRUE | Rep: number of repetition | Multivariate edge normality | TRUE | As above—only difference the aggregation is non-linear: maximum deviation from the null in all edges |
kNN | TRUE | TRUE | \(k_{min}\), \(k_{max}\) neighbour | / | FALSE | The distances found in kNN with k = \(k_{min}\) to k = \(k_{max}\) are averaged to create outlier scores |
Optics | TRUE | TRUE | MinPts: number of neighbour | / | FALSE | Outlier score is computed via a radius distance of core and board points |
Spoutlier | TRUE | TRUE | s: number of references | / | FALSE | The outlier score is calculated as the minimum within a small set of references observations kNN based |
SSN-m | TRUE | FALSE | / | Edge normality | TRUE | The p-value is calculated as a transformation of the difference between \(w^\alpha\) and \(w^{\alpha -q}\) |
Cook distance | FALSE | TRUE | / | LM assumptions | FALSE | The outlier value is calculated aggregating cook’s distance in every individual trying to predict one of the edge weights in the modulus. |