Table 1 Energy components (kcal/mol) calculated with solvated interaction energy (SIE) method (mean ± SD).
From: Computational model for lipid binding regions in phospholipase (Ves a 1) from Vespa venom
Ligands | \(\Delta\)E\(_{vdW}\) | \(\Delta\)E\(_{Ele}\) | \(\Delta\)G\(_{RF}\) | \(\gamma \Delta SA\) | \(\Delta G_{Bind}^{SIE}\) |
---|---|---|---|---|---|
DMPC | |||||
Run#1 | − 56.20 ± 3.76 | − 14.40 ± 2.78 | 19.37 ± 2.36 | − 11.77 ± 0.50 | − 9.49 ± 0.43 |
Run#2 | − 41.97 ± 6.09 | − 3.80 ± 3.67 | 9.24 ± 2.86 | − 9.80 ± 1.44 | − 7.74 ± 0.64 |
Run#3 | − 53.36 ± 3.98 | − − 19.14 ± 4.78 | 22.13 ± 3.91 | − 11.21 ± 0.70 | − 9.34 ± 0.51 |
Voxilaprevir | |||||
Run#1 | − 58.80 ± 3.60 | − 84.00 ± 6.63 | 84.88 ± 4.98 | − 11.45 ± 0.32 | − 10.16 ± 0.43 |
Run#2 | − 57.96 ± 4.59 | − 72.34 ± 11.32 | 75.11 ± 8.70 | − 10.91 ± 0.63 | − 9.81 ± 0.74 |
Run#3 | − 60.10 ± 3.03 | − 83.61 ± 9.49 | 84.43 ± 8.21 | − 11.52 ± 0.40 | − 10.31 ± 0.40 |
Ubrogepant | |||||
Run#1 | − 38.75 ± 3.14 | − 6.03 ± 2.62 | 8.99 ± 1.66 | − 7.06 ± 0.36 | − 7.48 ± 0.35 |
Run#2 | − 43.35 ± 2.75 | − 8.04 ± 1.59 | 15.78 ± 1.31 | − 8.55 ± 0.31 | − 7.52 ± 0.32 |
Run#3 | − 43.35 ± 2.90 | − 5.05 ± 1.48 | 14.58 ± 1.43 | − 8.47 ± 0.40 | − 7.32 ± 0.35 |
Doxycycline | |||||
Run#1 | − 34.81 ± 4.02 | − 13.00 ± 2.31 | 15.12 ± 1.46 | − 6.25 ± 0.51 | − 6.97 ± 0.46 |
Run#2 | − 32.57 ± 3.57 | − 5.24 ± 2.28 | 10.22 ± 1.81 | − 5.30 ± 0.41 | − 6.34 ± 0.41 |
Run#3 | − 37.39 ± 3.47 | − 13.22 ± 3.59 | 17.78 ± 2.88 | − 6.66 ± 0.62 | − 7.03 ± 0.49 |
Dutasteride | |||||
Run#1 | − 31.32 ± 2.32 | − 5.86 ± 3.71 | 11.09 ± 1.81 | − 6.33 ± 0.32 | − 6.29 ± 0.39 |
Run#2 | − 31.73 ± 4.96 | 0.04 ± 2.21 | 4.74 ± 2.42 | − 6.45 ± 1.09 | − 6.39 ± 0.62 |
Run#3 | − 40.28 ± 3.12 | − 0.65 ± 1.18 | 8.26 ± 1.31 | − 7.23 ± 0.32 | − 7.07 ± 0.35 |
Atovaquone | |||||
Run#1 | − 28.70 ± 3.43 | − 56.61 ± 3.56 | 61.96 ± 3.46 | − 5.24 ± 0.51 | − 5.89 ± 0.40 |
Run#2 | − 31.84 ± 2.70 | − 50.71 ± 2.54 | 52.94 ± 2.71 | − 5.70 ± 0.36 | − 6.59 ± 0.32 |
Run#3 | − 25.14 ± 5.03 | − 59.24 ± 7.45 | 60.73 ± 6.84 | − 4.88 ± 0.81 | − 5.88 ± 0.58 |