Table 1 Evaluation of different filtering strategies for Qiaseq variant calls using the Oncomine calls in the common regions as ground truth.
|  | Precision | Recall | F1 score | MCC | Youden’s J |
|---|---|---|---|---|---|
No filtering | 0.07 | 1 | 0.12 | 0 | 0 |
Rule-based filtering | 0.12 | 0.33 | 0.17 | 0.17 | 0.19 |
SVM-based filtering | 0.36 | 0.35 | 0.35 | 0.34 | 0.33 |
Post-processing filtering only | 0.20 | 0.4 | 0.26 | 0.23 | 0.22 |
