Figure 3
(A) Pairwise normalized distance (number of equal alleles divided by total number of shared alleles) between pedigreed samples from Low coverage dataset. Samples are grouped by pedigree (Fig. S4) and groups are clustered according to the heatmap values. The size of each panel is proportional to the number of shared alleles (i.e. the denominator of the pairwise normalized distance). The coloured bars represent a numerical id for each family, the imputed species (as described in main text), the P. anubis ancestry and the hybrid status (both as reported in 29). (B) Pairwise normalized distance between high coverage P. anubis and P. cynocephalus samples (columns) and low coverage samples (rows). Both rows and columns are clustered by k-means. The barplot represents the number of genotypes for each low coverage sample. Coloured cells give the information to: the species, the family (as coloured as in panel A), the imputed species and the P. anubis ancestry and hybrid status (as reported in Ref.29). Both heatmaps were produced with ComplexHeatmap R package56.
