Table 1 Frankia alni ACN14a genes up and down regulated in N-free condition supplemented with AgLTP24 versus N-free condition.
Label | Name | Log2 FoldChange | padj | Annotation |
---|---|---|---|---|
FRAAL1882 | 5.01 | 5.57E−03 | Small heat shock protein | |
FRAAL4716 | 4.14 | 3.89E−02 | Putative oxidoreductase | |
FRAAL6701 | groL | 4.10 | 4.24E−04 | Chaperone Hsp60 (GroEL), part of GroE chaperone system |
FRAAL4715 | 3.87 | 3.95E−02 | Putative transcriptional regulator of the TetR family | |
FRAAL1884 | ribD | 3.55 | 1.10E−03 | Putative riboflavin/cytosine deaminase (partial) |
FRAAL0166 | 3.46 | 4.42E−03 | Conserved hypothetical protein; putative membrane protein | |
FRAAL5655 | sdhB | 3.40 | 4.90E−03 | Succinate dehydrogenase iron-sulfur protein |
FRAAL1764 | lon | 3.29 | 2.11E−03 | DNA-binding ATP-dependent protease La; heat shock K-protein |
FRAAL2325 | 3.23 | 4.90E−03 | putative 3-(3-hydroxy-phenyl)propionate hydroxylase, FAD/NAD(P)-binding | |
FRAAL5654 | sdhA | 3.10 | 5.06E−03 | Succinate dehydrogenase flavoprotein subunit A |
FRAAL6439 | 3.07 | 1.30E−02 | Putative MoxR-like regulatory protein | |
FRAAL5653 | sdhC | 3.04 | 5.57E−03 | Succinate dehydrogenase cytochrome B subunit |
FRAAL6438 | 2.95 | 8.43E−03 | Hypothetical protein | |
FRAAL6814 | nifV | 2.94 | 4.90E−03 | Nitrogenase-associated homocitrate synthase |
FRAAL5037 | livG | 2.88 | 7.01E−03 | High-affinity branched-chain amino acid transport protein (ABC superfamily, atp_bind) |
FRAAL6643 | clpB | 2.82 | 4.90E−03 | ATP-dependent protease, Hsp 100, part of multi-chaperone system with DnaK, DnaJ, and GrpE |
FRAAL0168 | 2.81 | 1.56E−02 | Hypothetical protein; putative signal peptide; putative Dyp-type peroxidase domain | |
FRAAL6804 | nifZ | 2.79 | 5.06E−03 | NifZ protein |
FRAAL4308 | copD | 2.79 | 7.90E−03 | Copper resistance membrane protein |
FRAAL2326 | 2.76 | 2.55E−02 | Hypothetical protein; putative serine-threonine protein kinase | |
FRAAL0988 | 2.69 | 5.06E−03 | Putative regulator | |
FRAAL6807 | 2.62 | 4.62E−03 | Conserved hypothetical protein | |
FRAAL6813 | nifH | 2.62 | 1.11E−02 | Nitrogenase iron protein (NITROGENASE component II) (nitrogenase Fe protein) (nitrogenase reductase, dinitrogenase reductase) |
FRAAL1134 | groL | 2.61 | 5.55E−03 | Chaperone Hsp60 (GroEL), part of GroE chaperone system |
FRAAL0989 | 2.61 | 1.16E−02 | Cation-transporting P-type ATPase A | |
FRAAL6812 | nifD | 2.60 | 9.91E−03 | Nitrogenase molybdenum-iron protein alpha chain (nitrogenase component I) (Dinitrogenase) |
FRAAL6811 | nifK | 2.59 | 1.65E−02 | Nitrogenase molybdenum-iron protein beta chain (nitrogenase component I) (dinitrogenase) |
FRAAL1133 | groS | 2.58 | 6.17E−03 | Chaperone Hsp10 (GroES), part of GroE chaperone system |
FRAAL6638 | 2.57 | 1.41E−02 | Hypothetical protein | |
FRAAL6640 | grpE | 2.56 | 1.52E−02 | Heat shock protein (HSP-70 cofactor) |
FRAAL4648 | 2.50 | 3.88E−02 | (2,3-dihydroxybenzoyl)adenylate synthase (2,3-dihydroxybenzoate-AMP ligase; Dihydroxybenzoic acid-activating enzyme) | |
FRAAL4645 | cetJ2 | 2.48 | 2.55E−02 | Cupin domain-containing protein; fralnimycin synthesis |
FRAAL6859 | 2.47 | 1.43E−02 | Cupin domain-containing protein; fralnimycin synthesis | |
FRAAL4644 | cetJ3 | 2.42 | 2.98E−02 | Conserved hypothetical protein |
FRAAL2286 | 2.42 | 1.16E−02 | Putative WhiB-family transcriptional regulator; putative role in cell cycle control | |
FRAAL6639 | dnaK | 2.41 | 2.01E−02 | Chaperone Hsp70 in DNA biosynthesis/cell division |
FRAAL5036 | 2.38 | 1.21E−02 | Putative high-affinity branched-chain amino acid transport protein (ABC superfamily, atp_bind) | |
FRAAL1506 | 2.36 | 4.90E−03 | Hypothetical protein | |
FRAAL4245 | 2.35 | 7.01E−03 | Hypothetical integral membrane protein | |
FRAAL1607 | 2.34 | 4.35E−02 | Putative integral membrane protein | |
FRAAL6437 | 2.34 | 1.64E−02 | Putative transglutaminase, putative cysteine proteases, putative membrane protein | |
FRAAL5911 | 2.33 | 1.63E−02 | Hypothetical protein; putative signal peptide | |
FRAAL6335 | 2.32 | 2.91E−02 | Hypothetical protein | |
FRAAL6641 | dnaJ | 2.32 | 1.98E−02 | Heat shock protein (Hsp40), co-chaperone with DnaK |
FRAAL6197 | 2.28 | 4.92E−02 | Hypothetical protein; putative signal peptide | |
FRAAL6808 | nifX | 2.26 | 4.59E−02 | NifX protein |
FRAAL0596 | 2.20 | 4.24E−04 | Putative regulator | |
FRAAL1002 | 2.13 | 3.31E−02 | Putative cytochrome C biogenesis membrane protein | |
FRAAL6802 | erpA | 2.13 | 2.19E−02 | Conserved hypothetical protein; Thioredoxin-like domain |
FRAAL6860 | 2.13 | 3.70E−02 | Putative 1L-myo-inositol-1-phosphate synthase | |
FRAAL0060 | 2.11 | 1.21E−02 | Putative transcription regulator protein | |
FRAAL6803 | nifB | 2.08 | 2.09E−02 | FeMo cofactor biosynthesis protein nifB |
FRAAL1763 | 2.07 | 2.19E−02 | Hypothetical protein | |
FRAAL6337 | 2.06 | 1.68E−02 | Hypothetical protein | |
FRAAL5912 | sigE | 2.01 | 4.97E−02 | Putative RNA polymerase ECF-subfamily sigma factor |
FRAAL1001 | 1.98 | 2.55E−02 | Thiol:disulfide interchange protein helX precursor (Cytochrome c biogenesis protein helX) | |
FRAAL4136 | 1.98 | 3.31E−02 | Putative iron sulphur protein (Putative secreted protein) | |
FRAAL4747 | 1.97 | 2.80E−02 | Putative stress-inducible protein; putative adenine nucleotide-binding domain | |
FRAAL6642 | 1.97 | 1.72E−02 | Putative heat shock protein hspR | |
FRAAL6118 | 1.91 | 1.43E−02 | Putative glycosyltransferase | |
FRAAL5016 | 1.91 | 4.59E−02 | Hypothetical protein | |
FRAAL5461 | 1.82 | 2.25E−02 | Putative Epoxide hydratase | |
FRAAL5462 | 1.80 | 5.06E−03 | Putative TetR-family transcriptional regulator | |
FRAAL3287 | 1.76 | 2.20E−02 | Glycine-rich cell wall structural protein | |
FRAAL1786 | 1.74 | 2.20E−02 | Hypothetical protein | |
FRAAL4148 | 1.73 | 2.91E−02 | Hypothetical protein | |
FRAAL3704 | 1.73 | 4.65E−02 | Putative TetR-family transcriptional regulator | |
FRAAL5121 | 1.70 | 4.15E−02 | Putative integral membrane protein | |
FRAAL4491 | oxyR | 1.69 | 5.06E−03 | Transcriptional regulator of oxidative stress, regulates intracellular hydrogen peroxide (LysR family) |
FRAAL4781 | 1.68 | 4.22E−02 | Conserved hypothetical protein | |
FRAAL0075 | 1.67 | 2.98E−02 | Conserved hypothetical protein | |
FRAAL3899 | 1.66 | 1.98E−02 | Putative ATP/GTP binding protein; putative beta WD-40 repeat and TPR domains | |
FRAAL0863 | 1.66 | 1.21E−02 | RicinB lectin | |
FRAAL0081 | 1.65 | 1.21E−02 | Manganese transport system ATP-binding protein | |
FRAAL1576 | 1.63 | 4.22E−02 | Hypothetical protein; putative signal peptide | |
FRAAL6408 | 1.63 | 5.06E−03 | Conserved protein of unknown function | |
FRAAL6119 | 1.62 | 1.64E−02 | Putative succinoglycan biosynthesis protein | |
FRAAL5109 | qcrB | 1.61 | 2.19E−02 | Ubiquinol-cytochrome c reductase cytochrome b subunit |
FRAAL1508 | 1.59 | 5.06E−03 | Hypothetical protein; putative membrane protein | |
FRAAL5649 | 1.59 | 1.21E−02 | Integral membrane protein with Succinyl-CoA ligase domain | |
FRAAL6227 | 1.52 | 1.86E−02 | Putative NADH dehydrogenase | |
FRAAL5552 | 1.51 | 2.58E−02 | Hypothetical protein; putative signal peptide | |
FRAAL4430 | 1.47 | 1.21E−02 | Hypothetical protein; putative signal peptide | |
FRAAL1766 | 1.45 | 3.88E−02 | Putative pirin-like protein | |
FRAAL1505 | murI | 1.43 | 2.98E−02 | Glutamate racemase |
FRAAL0938 | 1.43 | 3.56E−02 | Putative molybdopterin converting factor | |
FRAAL1699 | groL | 1.39 | 1.56E−02 | Chaperone Hsp60 (GroEL), part of GroE chaperone system |
FRAAL4024 | 1.38 | 2.79E−02 | Putative monooxygenase with luciferase-like ATPase activity | |
FRAAL1427 | 1.35 | 4.97E−02 | Short-chain dehydrogenase/oxidoreductase with several Glucose/ribitol dehydrogenase and 17-Beta hydroxysteroid dehydrogenase domains | |
FRAAL6502 | 1.35 | 6.17E−03 | conserved hypothetical protein | |
FRAAL1154 | accD | 1.33 | 2.55E−02 | Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (ACCASE beta chain) |
FRAAL0924 | 1.33 | 4.97E−02 | Putative MarR-family transcriptional regulator; putative signal peptide | |
FRAAL2626 | 1.33 | 1.43E−02 | Hypothetical protein | |
FRAAL5351 | 1.31 | 4.90E−02 | Putative Na + /H + antiporter; putative membrane protein | |
FRAAL5685 | 1.29 | 4.45E−02 | Membrane-bound Ribonuclease BN | |
FRAAL5137 | 1.29 | 1.88E−02 | Hypothetical protein | |
FRAAL4890 | 1.25 | 2.19E−02 | Putative transcriptional regulator (partial match) | |
FRAAL1577 | 1.24 | 3.56E−02 | Short-chain dehydrogenase, NAD(P)-binding domain | |
FRAAL1016 | 1.23 | 1.65E−02 | Hypothetical protein | |
FRAAL0229 | 1.22 | 4.57E−02 | Hypothetical protein | |
FRAAL6260 | 1.22 | 2.55E−02 | Secreted subtilisin-like serine protease | |
FRAAL2542 | 1.21 | 2.01E−02 | Non-ribosomal peptide synthetase | |
FRAAL1157 | sucD | 1.13 | 3.88E−02 | Succinyl-CoA synthetase, alpha subunit, NAD(P)-binding |
FRAAL5156 | lipB | 1.11 | 4.85E−02 | Lipoyltransferase (Lipoyl-[acyl-carrier protein]-protein -N-lipoyltransferase) (Lipoate-protein ligase B) |
FRAAL5646 | fecD | 1.02 | 4.97E−02 | Citrate-dependent iron (III) transport protein (ABC superfamily, membrane) |
FRAAL4818 | 1.02 | 1.16E−02 | Hypothetical protein | |
FRAAL6723 | 1.01 | 3.51E−02 | Hypothetical protein; putative ATPase domain | |
FRAAL3352 | − 1.02 | 1.63E−02 | Putative phosphatidylinositol diacylglycerol-lyase | |
FRAAL0541 | − 1.05 | 2.19E−02 | Putative dehydrogenase/oxidoreductase | |
FRAAL0375 | − 1.11 | 2.97E−02 | Putative GntR-family transcriptional regulator | |
FRAAL0640 | − 1.13 | 1.21E−02 | Putative secreted cell wall peptidase | |
FRAAL2594 | − 1.16 | 1.98E−02 | Putative epoxide hydrolase | |
FRAAL1590 | − 1.19 | 2.80E−03 | Putative conserved protein; glyoxalase and dihydroxybiphenyl dioxygenase domain | |
FRAAL2705 | − 1.19 | 2.98E−02 | Hypothetical protein | |
FRAAL6479 | − 1.20 | 3.47E−02 | Short− chain dehydrogenase | |
FRAAL3995 | − 1.22 | 3.58E−02 | Putative hydrolase | |
FRAAL2484 | − 1.32 | 2.19E−02 | Conserved hypothetical protein | |
FRAAL3997 | − 1.38 | 7.64E−03 | Conserved hypothetical protein | |
FRAAL4133 | − 1.42 | 3.45E−02 | Putative glutathione S-transferase enzyme with thioredoxin-like domain | |
FRAAL2519 | − 1.43 | 3.09E−02 | Putative short-chain dehydrogenase | |
FRAAL2937 | − 1.45 | 2.25E−02 | Hypothetical protein | |
FRAAL3838 | − 1.46 | 4.97E−02 | Hypothetical protein; putative signal peptide | |
FRAAL3585 | − 1.48 | 3.31E−02 | Putative esterase | |
FRAAL3774 | − 1.54 | 2.55E−02 | hypothetical protein | |
FRAAL1571 | − 1.57 | 1.64E−02 | Putative acyl-CoA dehydrogenase | |
FRAAL0744 | − 1.59 | 5.55E−03 | Hypothetical protein; putative endonuclease domain | |
FRAAL2938 | − 1.62 | 8.43E−03 | Putative protein kinase | |
FRAAL3965 | − 1.63 | 2.11E−02 | Hypothetical protein; putative signal peptide | |
FRAAL2509 | − 1.63 | 3.31E−02 | Putative 3-ketoacyl-CoA thiolase | |
FRAAL0201 | − 1.67 | 2.98E−02 | Putative cytochrome P450 reductase | |
FRAAL3923 | − 1.69 | 4.22E−02 | Putative cytochrome P450 | |
FRAAL0376 | − 1.71 | 1.88E−02 | Cytosine/purine/uracil/thiamine/allantoin permease family protein | |
FRAAL4527 | − 1.71 | 5.57E−03 | Putative Glycoside hydrolase | |
FRAAL2508 | − 1.73 | 2.63E−02 | Protein associated with acetyl-CoA C-acyltransferase | |
FRAAL0316 | − 1.76 | 1.43E−02 | Carveol dehydrogenase | |
FRAAL0200 | − 1.87 | 6.87E−04 | NAD+-dependent aldehyde dehydrogenase | |
FRAAL2706 | − 1.89 | 1.98E−02 | Hypothetical protein | |
FRAAL0348 | − 1.90 | 1.30E−02 | Putative 6-methylsalicylic acid synthase | |
FRAAL2076 | narK | − 2.00 | 2.91E−02 | Nitrite membrane extrusion protein |
FRAAL2707 | − 2.00 | 1.43E−02 | Coenzyme PQQ synthesis protein | |
FRAAL2513 | − 2.00 | 2.19E−02 | Putative Acyl-CoA dehydrogenase | |
FRAAL3766 | − 2.65 | 1.52E−02 | Hypothetical protein |