Table 2 Summary of target prediction of mi-modules assigned to semi- and non-preserved m-modules by different prediction tools.
Software | Mi-module (number of miRNAs) | m-module (number of genes) | Number of the unique predicted targets |
|---|---|---|---|
MiRanda | Lightgreen (18) | Saddlebrown (47) | 38 mRNA, 9 TF |
Royalblue (16) | Green (652) | 376 mRNA, 15 TF | |
Darkgreen (15) | Salmon (211) | 162 mRNA, 36 TF | |
RNA22 | Lightgreen (18) | Saddlebrown (47) | 32 mRNA, 9 TF |
Royalblue (16) | Green (652) | 364 mRNA, 48 TF | |
Darkgreen (15) | Salmon (211) | 148 mRNA, 32 TF | |
RNAhybrid | Lightgreen (18) | Saddlebrown (47) | 16 mRNA, 3 TF |
Royalblue (16) | Green (652) | 269 mRNA, 19 TF | |
Darkgreen (15) | Salmon (211) | 111 mRNA, 8 TF | |
Common results (detected by at least two out of the applied software) | Lightgreen (18) | Saddlebrown (47) | 38 mRNA, 9 TF |
Royalblue (16) | Green (652) | 279 mRNA, 22 TF | |
Darkgreen (15) | Salmon (211) | 132 mRNA, 11 TF |
