Table 1 Top five differentially expressed transcripts between survival subtypes sorted by largest absolute log2FC values or absolute mean M-value difference for methylation.
From: Autoencoder-based multimodal prediction of non-small cell lung cancer survival
Omics type | Gene | Log2FC/mean difference | P | Reference |
|---|---|---|---|---|
mRNA | ALB | – 2.39 | 1.11e-24 | Stares et al.23 |
SLC13A2 | – 1.80 | 7.41e-13 | Bauer et al.24 | |
NFE4 | 1.75 | 2.61e-13 | Pan et al.46 | |
SCGB1A1 | – 1.63 | 3.28e-11 | Ban et al.25 | |
MTND1P23 | – 1.60 | 2.70e-14 | Zhou et al.47 | |
lncRNA | ERVH48-1 | 2.06 | 1.21e-25 | Qi et al.26 |
LINC01287 | 1.69 | 3.74e-10 | Zhang et al.27 | |
AC089983.1 | 1.25 | 8.60e-10 | Li et al.48 | |
FLJ22447 | 1.09 | 1.63e-14 | Ding et al.28 | |
RP11-356K23.1 | – 1.06 | 2.12e-08 | Lou et al.49 | |
miRNA | hsa-mir-4449 | 0.76 | 1.96e-05 | Yan et al.50 |
hsa-mir-184 | – 0.67 | 1.01e-03 | Lin et al.51 | |
hsa-mir-34c | – 0.67 | 1.34e-04 | Kim et al.29 | |
hsa-mir-891a | 0.64 | 3.90e-03 | Wan & Zheng30 | |
hsa-mir-34b | – 0.62 | 8.4e-04 | Kim et al.29 | |
DNA methylation | CAPS | 0.65 | 4.85e-05 | Pastor et al.52 |
SEPT9 | 0.44 | 1.28e-04 | Powrózek et al.31 | |
PTPRF | 0.39 | 1.60e-04 | Soulières et al.53 | |
FAM125B | – 0.35 | 7.76e-05 | Wang et al.33 | |
PIK3R2 | 0.32 | 1.37e-04 | Vallejo-Díaz et al.54 |
