Table 1 List of QTLs, SNP markers and their effect, and models applied for the current GWAS analysis.
From: Exploring GWAS and genomic prediction to improve Septoria tritici blotch resistance in wheat
QTL | SNP | Chr | Pos (cM) | MAF | QTN effect | LOD score | Model | ||
|---|---|---|---|---|---|---|---|---|---|
SLUSTB_1 | AX-89326139 | 1B | 40.3 | 0.21 | NA | NA | FarmCPU*** | ||
SLUSTB_2 | BS00066305_51 | 1B | 110.1 | 0.3 | 14.9 | 4.68 | pKWmEB*** | ||
SLUSTB_3 | AX-158572447 | 2A | 20.1 | 0.46 | NA | NA | FarmCPU*** | ||
SLUSTB_4 | AX-158573239 | 2A | 63.8 | 0.44 | NA | NA | Blink***, FarmCPU*, GLM* | ||
AX-158596603 | 2A | 64 | 0.43 | 14.1–43.4 | 5.43 | Blink**, pLARmEB*, FASTmrEMMA*** | |||
SLUSTB_5 | Tdurum_contig54634_815 | 2B | 31.2 | 0.40 | − 17.7 to − 16.0 | 4.51 | pLARmEB***, pKWmEB*** | ||
SLUSTB_6 | AX_158557660 | 2B | 81.4 | 0.19 | 17.8 | 5.21 | pLARmEB***, pKWmEB*** | ||
SLUSTB_7 | BS00083329_51 | 2B | 135.5 | 0.37 | 15 | 4.01 | pKWmEB** | ||
Kukri_c17_1246 | 2B | 135.5 | 0.23 | 20.5–34 | 4.22 | Blink***, FASTmrEMMA*, FASTmrMLM** | |||
SLUSTB_8 | AX-111036153 | 2D | 2.6 | 0.37 | 14.9 | 4.32 | pLARmEB*** | ||
SLUSTB_9 | wsnp_Ex_c8517_14315660 | 3A | 82.4 | 0.11 | NA | NA | FarmCPU** | ||
SLUSTB_10 | wsnp_Ex_c12220_19528388 | 3B | 60.5 | 0.12 | − 18.4 | 4.98 | SUPER***, GLM**, Blink*, pLARmEB**, pKWmEB*** | ||
SLUSTB_11 | Excalibur_c4325_1150 | 4A | 120.4 | 0.19 | NA | NA | FarmCPU** | ||
SLUSTB_12 | wsnp_CAP12_c1101_569783 | 4B | 66.4 | 0.45 | − 20.3 | 4.81 | FarmCPU***, mrMLM**, pKWmEB*** | ||
SLUSTB_13 | AX-158558835 | 5A | 44.7 | 0.48 | NA | NA | Blink** | ||
SLUSTB_14 | AX-158585919 | 5B | 73.6 | 0.25 | NA | NA | GLM**, SUPER* | ||
AX-158534098 | 5B | 73.6 | 0.25 | NA | NA | GLM**, SUPER* | |||
SLUSTB_15 | IACX7841 | 5B | 134.4 | 0.25 | NA | NA | GLM**, SUPER* | ||
wsnp_RFL_Contig3238_3265410 | 5B | 134.4 | 0.24 | NA | NA | GLM**, SUPER* | |||
SLUSTB_16 | IAAV64 | 6D | 121.5 | 0.08 | 58.6 | 4.87 | mrMLM*** | ||
SLUSTB_17 | AX-158537280 | 7A | 51.2 | 0.28 | -11.7 | 4.53 | pLARmEB*, mrMLM***, pKWmEB**, FASTmrMLM*** | ||
SLUSTB_18 | AX-108934671 | 7B | 28.1 | 0.42 | NA | NA | SUPER** | ||
SLUSTB_19 | Kukri_c51101_351 | 7B | 79.8 | 0.04 | 35.4 | 5.66 | FarmCPU***, Blink***, FASTmrEMMA*, FASTmrMLM** | ||
SLUSTB_20 | IAAV4542 | 7D | 142 | 0.13 | NA | NA | FarmCPU** | ||
