Table 2 List of the potentially sensitive regions according to the cryoprotectant.
From: Cryopreservation effect on DNA methylation profile in rainbow trout spermatozoa
Regions | Nb DMCs DMSO | Nb DMCs MeOH | Nb DMCs Gly | Genomic feature | Gene | Gene ID |
|---|---|---|---|---|---|---|
2: 84,969,754–757 | 2 | 0 | NA | Introns | NA | ENSOMYG00000033911 |
3: 28,999,827–911 | 0 | 0 | 4 | Promoter 5kb | znf385d | ENSOMYG00000007065 |
3: 38,641,242–260 | 0 | 0 | 2 | Intron 1 | ptprub | ENSOMYG00000000944 |
6: 27,006,900–938 | 3 | 0 | NA | Promoter 5kb | ebf2 | ENSOMYG00000007222 |
6: 63,230,513–563 | 0 | 3 | 0 | Introns | adam10a | ENSOMYG00000010593 |
9: 13,905,316–359 | 0 | 0 | 2 | Exons | NA | ENSOMYG00000012701 |
9: 40,751,199–319 | 0 | 3 | 0 | Promoter 5kb | NA | ENSOMYG00000007596 |
10: 58,822,172–181 | 2 | NA | NA | Intron 1 | NA | ENSOMYG00000026688; ENSOMYG00000026627; ENSOMYG00000026688; ENSOMYG00000026627 |
14: 50,325,080–136 | 0 | 2 | 0 | Intron 1 | pcdhb | ENSOMYG00000014270 |
16: 13,278,338–342 | NA | 2 | NA | Introns | SLC39A11 | ENSOMYG00000033173 |
17: 57,694,790–858 | 0 | 2 | 0 | Introns | cdh4 | ENSOMYG00000044618 |
18: 26,437,868–930 | NA | NA | 7 | Promoter 5kb | OSBPL10 | ENSOMYG00000025071 |
19: 14,572,357–390 | 0 | 0 | 2 | Exons; intron 1 | ndufs8a | ENSOMYG00000005413 |
19: 43,252,495–511 | 0 | 0 | 2 | Promoter 5kb | Ick | ENSOMYG00000032229 |
19: 45,634,077–080 | NA | 2 | NA | Introns | col12a1a | ENSOMYG00000006853 |
20: 20,273–301 | 0 | 3 | 1 | Downstream | 5_8S _rRNA | ENSOMYG00000008170 |
20: 3,482,719–759 | 3 | NA | 0 | Introns | cdhr1 | ENSOMYG00000009577 |
20: 13,286,267–314 | 2 | 0 | 1 | Promoter 5kb | p4ha1a | ENSOMYG00000043711 |
20: 30,738,907–987 | 0 | 0 | 3 | Introns | khdrbs2 | ENSOMYG00000043413 |
25: 19,063,744–823 | 0 | 4 | NA | Intron 1 | slc26a2 | ENSOMYG00000017229 |
25: 82,566,468–493 | NA | 1 | 2 | Introns | smoc1 | ENSOMYG00000037447 |
29: 15,383,450–576 | NA | 11 | 0 | Exon 1 | NA | ENSOMYG00000042159 |
MSJN01,019,798.1: 257,543–574 | NA | 0 | 2 | Intron 1 | NA | ENSOMYG00000040507 |
MSJN01,053,808.1: 39,504–747 | 0 | 0 | 8 | Introns | NA | ENSOMYG00000030867 |
MSJN01,068,470.1: 831–873 | 0 | 2 | 0 | Exon 1; Promoter 5kb | U2 | ENSOMYG00000041560; ENSOMYG00000041563 |
MT: 6657–6754 | 0 | 2 | 0 | *:See legend | ||
