Table 1 Accuracy comparison with ONT simulated reads.Significant values are in bold.
MAPQ_T | minimap2 | minimap2-fpga | ||||
|---|---|---|---|---|---|---|
Intel FPGA-based system | Xilinx FPGA-based system | |||||
No. reads with MAPQ > \(=\) MAPQ_T | No. wrong mappings | No. reads with MAPQ > \(=\)MAPQ_T | No. wrong mappings | No. reads with MAPQ > \(=\) MAPQ_T | No. wrong mappings | |
With base-level alignment | ||||||
60 | 960462 | 0 | 960470 | 0 | 960464 | 0 |
59 | 10210 | 1 | 10213 | 1 | 10209 | 1 |
38 | 20705 | 1 | 20694 | 1 | 20704 | 1 |
8 | 1477 | 1 | 1477 | 1 | 1477 | 1 |
5 | 492 | 2 | 492 | 2 | 492 | 2 |
4 | 492 | 1 | 492 | 1 | 492 | 1 |
3 | 546 | 5 | 544 | 5 | 544 | 5 |
2 | 568 | 2 | 570 | 2 | 570 | 2 |
1 | 2730 | 456 | 2730 | 456 | 2730 | 456 |
0 | 2198 | 1241 | 2198 | 1241 | 2198 | 1241 |
Unmapped | 120 | 120 | 120 | |||
Without base-level alignment | ||||||
60 | 970514 | 0 | 970515 | 0 | 970516 | 0 |
22 | 16981 | 1 | 16981 | 1 | 16979 | 1 |
6 | 1193 | 1 | 1194 | 1 | 1195 | 1 |
5 | 1176 | 3 | 1177 | 3 | 1177 | 3 |
4 | 1107 | 1 | 1106 | 1 | 1104 | 1 |
3 | 1131 | 9 | 1130 | 9 | 1130 | 8 |
2 | 1223 | 10 | 1222 | 10 | 1222 | 10 |
1 | 1525 | 22 | 1525 | 22 | 1525 | 22 |
0 | 5030 | 1985 | 5030 | 1985 | 5032 | 1985 |
