Table 1 RNA-seq data for the sequenced samples, including information about the rate of reads per library and their main features. In gene expression analyses, we employed normalized values based on the Trimmed Mean of M-values (TMM) method.
Sample | Total Sequences | Trimmed sequences | Sequence length* | %GC* |
|---|---|---|---|---|
PPCM01 | 15,660,140.00 | 13,115,353.00 | 10–149 | 45 |
PPCM03 | 24,516,654.00 | 22,914,561.00 | 10–149 | 44 |
PPCM08 | 19,262,065.00 | 18,372,066.00 | 10–149 | 44 |
PPCM04 | 13,000,078.00 | 10,366,722.00 | 10–149 | 43 |
PPCM05 | 12,682,833.00 | 12,374,601.00 | 10–149 | 43 |
PPCM06 | 7,078,678.00 | 6,813,444.00 | 10–149 | 45 |
PPCM10 | 15,249,815.00 | 13,368,819.00 | 10–149 | 42 |
All | 107,450,263.00 | 9,325,566.00 |
