Table 2 Statistics of raw data, trimmed data, original assembly, and transcriptome assembly of telencephalon transcriptome from C. macropomum.

From: First neurotranscriptome of adults Tambaquis (Colossoma macropomum) with characterization and differential expression between males and females

Raw data

 Number of raw reads

107,450,263

 Total Bases (bp)

83,1395 MB

 Average GC content

44%

Trimmed data

 Number of reads after trimming

97,325,566

 No concordantly aligned reads

28,379,831 (29.16%)

 1-time concordantly aligned reads

28,659,692 (29.45%)

  > 1-time concordantly aligned reads

40,286,043 (41.39%)

 No concordantly aligns read pairs:

28,379,831

 1-time discordantly aligned read pairs

9,346,861 (32.93%)

 No aligned read pairs

19,032,970

 Concordantly read pairs:

38,065,940

 Not aligned

4,451,474 (11.69%)

 1-time aligned

1,416,573 (3.72%)

  > 1-time aligned

32,197,893 (84.58%)

 Overall alignment rate

97.71%

De novo assembly

 Number of transcripts

896,238

 Number of contigs

267,785