Table 3 Dataset used for phylogenetic analysis. Genbank sequences include newly generated nrITS, nrLSU and nrSSU amplicons relative to the putative novel species.
Taxon | Strain | ITS | SSU | LSU |
|---|---|---|---|---|
Helotiales | ||||
Gelatinodiscaceae | ||||
Ascocoryne cylichnium | PDD7567 | AY789395 | – | – |
KUS-F52351 | JN033406 | – | JN086709 | |
HMAS 90651 | MK584973 | KR094137 | OQ534476 | |
Ascotremella faginea | JAC14763 | MK432811 | – | – |
Ascocoryne sarcoides | CBS364.61 | MH858085 | – | MH869655 |
CBS171.56 | MH857563 | – | MH869105 | |
CBS155.35 | MH855613 | – | MH867123 | |
HKAS 90651 | MK584973 | MK585054 | MK591999 | |
Ascocoryne solitaria | CBS:738.84 | HM152545 | DQ002904 | – |
Byssoascus striatosporus | CBS 642.66 | MH858902 | NG_070873 | MH870573 |
Cadophora fastigiata | CBS:869.69 | MH859469 | – | MH871247 |
DAOM 225754 | JN942894 | JN939030 | JN938877 | |
Chlorociboria aeruginosa | HMAS 285453 | OQ534206 | – | OQ534492 |
AFTOL-ID 151 | DQ491501 | AY544713 | AY544669 | |
Dimorphospora foliicola | CBS 221.59 | MH857844 | – | MH869385 |
Gelatinodiscus flavidus | OSC 6579 | EU652349 | – | EU652381 |
Helicodendron microsporum | CBS:100149 | MH862690 | KR078445 | KR078441 |
Hyaloscypha variabilis | UAMH 8861 | NR_121313 | NG_073616.1 | |
Myxotrichum deflexum | CBS 228.61 | LN833542 | NG_065476 | MH872267 |
Neobulgaria alba | ICMP 18394 | NR_137054 | HM116781 | – |
ICMP18072 | HM116745 | HM116761 | – | |
Neobulgaria koningiana | MUCL 9775 | NR_165900 | MK185672 | MK185694 |
Neobulgaria premnophila | CBS 243.80 | MH861260 | U45445 | MH873029.1 |
Neobulgaria lilacina | M258 | – | EU940066 | EU940141 |
Neobulgaria pura | CBS 478.97 | JN033385 | – | JN086688 |
CUP-063609 | DQ257366 | DQ257364 | DQ257365 | |
Neobulgaria sp. | UBOCC-A-118154 | – | – | MT226563 |
Neocudoniella radicella | UAMH 5794 | NR_121301 | AY524843 | – |
Xerombrophila crystallifera | CBS128289 | MH864847 | – | MH876294 |
CBS 132843 | JX481974 | – | MH878488 | |
Leotiales | ||||
Leotiales i.s | ||||
Alatospora acuminata | CBS 104.88 | MH862121 | – | MH873811 |
CCM-F 02383 | AY204587 | – | KC834018 | |
Alatospora pulchella | CCM F-502 | KC834039 | – | KC834019 |
Flagellospora curvula | CB_M13 | KC834045 | MK226450 | KC834024 |
Collophora paarla | CBS 120878 | GQ154575 | GQ154632 | GQ154611 |
Pallidophorina paarla | CBS 120877 Type | NR_119749 | GQ154634 | MK314610 |
Leotiaceae | ||||
Leotia lubrica | KKM 427 | KF836621 | – | KF836631 |
Microglossum rufum | AFTOL-ID 1292 | DQ257360 | DQ471033 | DQ470981 |
Microglossum olivaceum | KL220 | MH752066 | KX090868 | KX090817 |
Thuemenidium atropurpureum | ILLS 61044 | JQ256427 | – | JQ256441 |
Mniaciaciae | ||||
Mniaecia albida | CBS 126302 | MH863969 | – | MH875424 |
CBS 126301 | MH863968 | – | MH875423 | |
M193 | EU940204 | EU940055 | EU940128 | |
Mniaecia jungermanniae | M145 | EU940185 | EU940036 | EU940109 |
Mniaecia nivea | M167 | EU940188 | EU940042 | EU940115 |
Tympanidiaceae | ||||
Aotearoamyces nothofagi | PDD 95741 | NR_164216 | – | – |
PDD 106298 | MG807392 | MG807389 | MG807388 | |
ICMP 21868 | – | MG807390 | MG807386 | |
Claussenomyces kirschsteinianus | GMC2015-05-022 | KY689631 | KY689631 | KY689631 |
GM2014-11-122 | KY689629 | KY689629 | KY689629 | |
GMC 2014-11-084 | KY689628 | KY689628 | KY689628 | |
ICMP 21869 | – | MG807391 | MG807387 | |
Claussenomyces olivaceus | NB-479 | KY633590 | – | KY633629 |
Claussenomyces prasinulus | CBS 111551 | MN082653 | – | MN082657 |
Collopphorina africana | CBS 120872 | NR_119748 | GQ154630 | MK314588 |
CBS:120879 | GQ154571 | GQ154631 | GQ154610 | |
Tympanis confusa | CBS 354.55 | MK314568 | – | – |
Tympanis tsugae | CBS 369.55 | MH857515 | – | MH869054 |
Phacidiales | ||||
Helicogoniaceae | ||||
Eleutheromyces subulatus | CBS 458.88 | NR_145309 | EU754063 | EU754162 |
CBS 113.86 | KJ710468 | EU754062 | KJ710444 | |
Gelatinipulvinella astraeicola | NBRC 112540 Type | LC425040 | LC434573 | LC429381 |
Geltingia associata | Perez-Ortega 1039 | KJ559540 | KJ559584 | KJ559562 |
Gelatinopsis fungicola | NBRC 112558 | LC425051 | LC434551 | LC429387 |
Phacidiaceae | ||||
Allantophomopsis lunata | CBS 137781 | KR873229 | – | KR873263 |
Bacilliformis hyalinus | MFLU 18-1811 | MK584997 | – | MK591951 |
Bulgaria inquinans | AFTOL_ID_916 | KJ663831 | DQ471008 | DQ470960 |
Darkera picea | CPC 23897 | NR_132906 | KM108446 | KM108397 |
Phacidium lacerum | CBS 130.30 | KJ663841 | – | KJ663882 |
Phacidium lauri | CBS 308.68 | KJ663850 | – | KJ663891 |
Potebniamyces pyri | AFTOL-ID 744 | DQ491510 | DQ470997 | DQ470949 |
Thelebolales | ||||
Holwayaceae | ||||
Holwaya mucida | – | DQ257357 | DQ257355 | DQ257356 |
CNF 2/8749 | OM282975 | OM282978 | ||
CBS:630.85 | MN082656 | MN082660 | ||
Crinula caliciiformis | AFTOL_ID 272 | KT225524 | AY544729 | AY544680 |
Unresolved taxa | ||||
MUT 6736 | OQ911372 | OR145145 | OQ920106 | |
MUT 6737 | OQ911371 | OR145144 | OQ920105 | |
MUT 6739 | OQ911369 | OR145143 | OQ920103 | |
Gleoglossales | ||||
Gleoglossaceae | ||||
Sarcoleotia globosa | OSC6363 | AY789410 | – | AY789409 |
HMAS71956 | AY789300 | AY789298 | AY789299 | |
