Table 3 Summary of the MQTLs detected for salinity tolerance in rice.

From: Meta-analysis of identified genomic regions and candidate genes underlying salinity tolerance in rice (Oryza sativa L.)

MQTL name

Chr

Position (cM)

Start marker

End marker

CI (95%)

Genetic left

Genetic right

Genomic left

Genomic right

No of candidate QTLs

Candidate QTLs

MQTL1.1

1

51.58

Bin1_11.19–11.26

Bin1_11.98–12.32

0.73

51.45

51.68

11.23

12.15

28

SDW, SNA, SES, SL, RL, RNA, SFW, PH, RDW, SNAK, RK

MQTL1.2

1

102.58

Bin1_21.99–22.18

Bin1_23.5–23.74

0.1

102.40

102.69

22.09

23.62

75

SES, SH, SNAK, SK, CHL, SFD, SL, RDW, SDW, FNAK, RNA, PH, SFW, SNA, PF, RNAK

MQTL1.3

1

53.71

Dj01_13425188F

Sj01_13981650R

1.03

53.67

53.81

13.43

13.98

10

SES, RNA, SNA, SNAK

MQTL1.4

1

86.04

Sj01_21160869F

Sj01_22728151R

3.01

86.00

86.19

21.16

22.73

5

SES, SK

MQTL1.5

1

116.02

Dj01_29556725R

Dj01_29707926R

0.14

115.98

116.08

29.56

29.71

31

FNAK, SH, SNAK, SES, SK, RNA, SNA, RK, RNAK

MQTL1.6

1

53.04

Dj01_13193179F

Bin1_11.98–12.32

1.35

52.98

53.10

13.19

14.23

11

PH, RL, SFW, SDW, SES, SL

MQTL1.7

1

93.73

Dj01_23852434R

Dj01_23986664R

0.23

93.66

93.76

23.85

23.99

39

SFW, SDW, SES, SL, PH, RDW, PF, SH, CHL, RL

MQTL2.1

2

29.86

Dj02_07536262F

Dj02_07781792F

0.47

29.85

29.90

7.54

7.78

17

SES, PF, SK, SL, RDW, SNA, SDW, SFW

MQTL2.2

2

57.72

Dj02_14366103F

Bin2_10.14–10.79

0.49

57.47

58.20

14.37

15.01

18

SES, SK, SNA, RFW, SDW, RL

MQTL2.3

2

83.78

Sj02_21161357R

Dj02_21613227F

0.81

83.72

83.82

21.16

21.61

7

SL, SES, RDW, SNA, SK, SNAK, RFW

MQTL2.4

2

26.49

Dj02_06374313R

Dj02_07234989F

1.68

26.47

26.53

6.37

7.23

8

SES, SK, SNA

MQTL2.5

2

52.32

Sj02_13307122F

Dj02_13470371F

0.3

52.20

52.38

13.31

13.47

8

SFW, SES, SK

MQTL2.6

2

62.28

Sj02_15807823F

Sj02_16056120R

0.43

62.20

62.39

15.81

16.06

14

SNA, SNAK, SK, SES, RNAK

MQTL2.7

2

29.84

Sj02_07525457R

Dj02_07781792F

0.47

29.66

29.85

7.53

7.78

12

SL, SDW, PF, SES, SDS, RDW

MQTL2.8

2

83.51

Sj02_21146226F

Dj02_21461962R

0.03

83.42

83.71

21.15

21.46

14

RDW, PL, SES, IR, SL, SDW, GYLD, RL

MQTL3.1

3

30.91

Sj03_07607092R

Dj03_08259469F

1.22

30.91

30.93

7.61

8.26

7

RL, SFW, SES, RDW, BM, SK

MQTL3.2

3

57.79

Dj03_13985031R

Sj03_15864306F

4.25

57.78

57.81

13.99

15.86

9

RDW, SK, SNAK, SFW, SDW, SNA

MQTL3.3

3

86.05

Dj03_21966002R

Dj03_22049522R

0.1

86.03

86.10

21.97

22.05

16

SES, SDS, SK, SFW, SNA, SNAK, CHL, SL, SDW

MQTL3.4

3

50.68

Sj03_11108193R

Dj03_14901674R

7.43

50.67

50.69

11.11

14.90

6

RK, SES, SK, SNAK, SNA

MQTL3.5

3

20.16

Sj03_05343807R

Sj03_05349416F

0.49

20.16

20.17

5.34

5.35

5

RL, RDW, SFW, BM

MQTL3.6

3

58.53

Sj03_13841038R

Sj03_16147935F

4.55

58.41

58.53

13.84

16.15

5

RDW, SFW, SDW

MQTL3.7

3

86.29

Dj03_22049522R

Dj03_22107671R

0.08

86.28

86.39

22.05

22.11

14

PH, RL, SL, SFW, SES, SDS, SDW, CHL

MQTL4.1

4

19.47

Dj04_04170196F

Dj04_05950987R

3.54

19.44

19.50

4.17

5.95

5

SFW, GYLD, DM

MQTL4.2

4

52.5

Dj04_13251149F

Dj04_13674458R

0.72

52.44

52.60

13.25

13.67

5

SK, SNA, SNAK, RDW, SES

MQTL4.3

4

61.26

Bin4_13.97–14.12

Dj04_16001101R

1.17

60.94

61.23

14.05

16.00

8

SES, SNAK, SDW, SFW

MQTL4.4

4

80.26

Sj04_20496453R

Sj04_20593680F

0.16

80.20

80.28

20.50

20.59

13

RNA, RK, RNAK, SNAK, SDW, SL, SK, GP, IR, SFW

MQTL4.5

4

19.44

Dj04_04170196F

Dj04_05928778R

3.55

19.43

19.44

4.17

5.93

5

DM, SFW, NFS, GYLD

MQTL4.6

4

29.14

Dj04_07389255R

Dj04_07593548R

0.29

28.69

29.27

7.39

7.59

5

GP, SH, RL

MQTL4.7

4

59.66

Dj04_14237029R

Bin4_14.55–14.97

4.12

58.50

58.66

14.24

14.76

5

SES, SDW, SFW

MQTL4.8

4

80.58

Sj04_20593680F

Dj04_20683782F

0.1

80.50

80.59

20.59

20.68

5

SL, IR, SDW, SFW, GP

MQTL5.1

5

40.08

Sj05_09216782R

Sj05_11207151R

3.97

39.66

40.50

9.22

11.21

7

CHL, RL, SL, SNAK, RNAK, SNA

MQTL5.2

5

55.1

Dj05_13712994R

Sj05_14450116F

1.47

54.82

55.33

13.71

14.45

5

SDW, RDW, SES, SFW

MQTL5.3

5

82.82

Sj05_21045832R

Dj05_21302103F

0.4

82.75

82.92

21.05

21.30

15

SNAK, SFW, SES, SL, SNA, PH, BM, RDW, SK

MQTL5.4

5

54.56

Sj05_13572519F

Sj05_14344276R

1.44

54.46

54.59

13.57

14.34

8

RL, RDW, SFW, SES, SDW

MQTL5.5

5

81.68

S5_20820664

Dj05_20956305F

0.44

82.63

82.72

20.82

20.96

12

SL, SES, SFW, PF, BM, PH, RDW

MQTL6.1

6

38.97

Sj06_09382846R

Dj06_10547551F

2.24

38.86

39.03

9.38

10.55

5

SDW, SES, SL

MQTL6.2

6

70.25

Dj06_17122068R

Bin6_12.44–13.03

3.17

70.23

70.27

17.12

12.74

6

SNA, RNA, SES, RL

MQTL6.3

6

93.62

Sj06_23592921R

Sj06_24128786R

1.19

93.60

93.62

23.59

24.13

10

GYLD, SNAK, RK, RNA, SFW, RL

MQTL6.4

6

69.57

Dj06_16822772F

Dj06_18803272F

3.69

69.54

69.59

16.82

18.80

5

SNA, RNA, SES

MQTL6.5

6

39.84

Dj06_09635471F

Sj06_10727303F

2.13

39.60

39.85

9.64

10.73

8

SDW, SES, SL, SFW

MQTL6.6

6

63.1

Bin6_11.04–11.16

Sj06_16652720F

1.81

63.08

63.24

11.10

16.65

10

SDS, CHL, SES, IR, RL, SDW

MQTL6.7

6

96.2

Sj06_24039978F

Sj06_25103415R

2.05

96.09

96.20

24.04

25.10

9

GYLD, SFW, RL, RK, BM

MQTL7.1

7

61.24

Dj07_14488453R

Sj07_16873873F

4.83

61.14

61.37

14.49

16.87

9

SES, RDW, RNA, RL

MQTL7.2

7

9.47

Sj07_01801193R

Sj07_03154026R

2.49

9.42

9.55

1.80

3.15

6

RDW, SDW, SFW

MQTL7.3

7

56.92

Dj07_14488453R

Dj07_14672955R

0.38

56.89

56.96

14.49

14.67

5

SDS, SES, CHL

MQTL8.1

8

84.94

Sj08_21582839F

Dj08_21828309F

0.3

84.83

85.12

21.58

21.83

6

GYLD, RK, RNAK, RFW

MQTL8.2

8

80.14

Dj08_18717359R

Dj08_22198956R

6.79

80.01

80.17

18.72

22.20

8

SK, SNAK, SNA, SES, RK, RNAK

MQTL8.3

8

23.1

Sj08_05750246F

Sj08_06044001R

0.52

23.03

23.14

5.75

6.04

5

CHL, BM, RDW, SDW

MQTL8.4

8

84.94

Sj08_21582839F

Dj08_21747733F

0.31

84.83

85.12

21.58

21.75

6

SFW, GYLD, SL, RFW

MQTL9.1

9

24.86

Dj09_06118286F

Dj09_06831346F

1.39

24.80

24.92

6.12

6.83

9

SFW, SNA, SES, RDW, RFW, RNA, RNAK, SDW

MQTL9.2

9

41.54

Dj09_10618925R

Dj09_10752402R

0.09

41.54

41.60

10.62

10.75

7

CHL, RL, SES

MQTL9.3

9

62.92

Dj09_16057823R

Bin9_14.39–14.71

0.49

62.68

62.92

16.06

14.55

14

SES, SDS, CHL, RL, RK, RNA, RNAK, SNAK, SDW, RFW

MQTL9.4

9

61.8

Bin9_12.72–13.11

Sj09_17214079R

5.2

61.76

61.91

12.92

17.21

6

RNAK, SNAK, RK, SES, RNA

MQTL10.1

10

85.23

Dj10_21071821F

Sj10_22586330F

2.95

85.19

85.25

21.07

22.59

16

BM, CHL, SK, PF, SES, RL

MQTL10.2

10

126.18

RM8207

RM3152

0.73

126.16

126.41

9.80

10.21

6

CHL, SL, GP, IR, RL

MQTL10.3

10

84.49

Dj10_20992328F

Sj10_22266999F

2.52

84.40

84.59

20.99

22.27

13

PF, BM, CHL, RL, SES

MQTL10.4

10

126.17

RM8207

RM311

0.54

126.16

126.41

9.80

10.23

6

CHL, SL, GP, IR, RL

MQTL11.1

11

67.46

Dj11_17355923R

Dj11_17412175F

0.11

67.43

67.53

17.36

17.41

7

SNA, SL, SFW, SES

MQTL11.2

11

8.5

Dj11_02304244R

Sj11_02345272F

0.07

8.43

8.54

2.30

2.35

7

CHL, SES, SDW

MQTL11.3

11

39.01

Sj11_09688800F

Dj11_10527020F

1.65

38.99

39.18

9.69

10.53

5

SDW, RL, RDW, SES

MQTL11.4

11

67.47

Dj11_17340485F

Sj11_17434166R

0.11

67.43

67.53

17.34

17.43

6

SL, RFW, SFW, SIS, SES

MQTL12.1

12

65.97

Dj12_16350381F

S12_17681133

2.26

65.90

66.02

16.35

17.68

5

SFW, SDW, SL, IR

MQTL12.2

12

72.57

Bin12_17.05–17.16

S12_18855850

0.04

72.40

72.70

17.11

18.86

13

SH, SFW, SNA, SES, SDW, SNAK, RDW, SL, RFW

MQTL12.3

12

46.7

Bin12_9.31–9.4

Sj12_13864120F

7.15

46.23

46.78

10.39

13.86

6

SNAK, SES, SK

MQTL12.4

12

72.43

Bin12_17.05–17.16

Dj12_18705808F

0.04

72.40

72.70

17.11

18.71

10

SES, SFW, SL, SH, SDW, RDW

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