Figure 1 | Scientific Reports

Figure 1

From: Colostrum as a source of ESBL-Escherichia coli in feces of newborn calves

Figure 1

Core SNP phylogeny of ESBL-producing ST10 isolates originating from calf feces, pooled colostrum, and milking pot. Core genome SNPs were called using snippy v. 4.4.1. SNP distances were calculated and depicted in a heat diagram (SNP distance ranged from 0 to 760 sites). The phylogenetic tree is based on a core SNP alignment and visualized in iTOL. Additionally, presence of CTX-M-1 and CTX-M-15 were depicted in the phylogenetic tree.

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