Table 5 Paternally-provided REs and associated genes.

From: A comprehensive analysis of spermatozoal RNA elements in idiopathic infertile males undergoing fertility treatment

Fold-Enrichment (Estill, MS et al., 2019, Swanson, GM et al., 2023)24,28

RE-RNA

Paternally provided RE (hg38)

Mfuzz RE (T2T)

5 × paternally enriched

ADAT1

chr16_75622717_75622816

chr16_81656516_81656615

chr16_81657135_81657280

CCDC9

chr19_47271274_47271953

chr19_50082866_50083243

chr19_50083423_50083737

chr19_50083893_50083997

chr19_50085922_50086173

chr19_50089933_50090016

chr19_50095881_50096016

chr19_50096602_50097265

FUS

chr16_31189665_31189794

chr16_31577637_31578263

KIAA0586

chr14_58487007_58487166

chr14_52665509_52665581

chr14_52666879_52667106

chr14_58472199_58472279

chr14_52672869_52673063

chr14_52674769_52674956

chr14_52764218_52764317

NPIPA8

chr16_18321017_18321124

chr16_18328260_18328367

chr16_18339845_18339976

NPIPB15

chr16_74389995_74390030

chr16_80195645_80195806

chr16_80310038_80310199

chr16_80437867_80438580

SEC31A

chr4_82818661_82819253

chr4_86172963_86173787

chr4_86178084_86178257

chr4_86186231_86186409

chr4_86204976_86205090

TMEM63B*

chr6_44148792_44148945

chr6_43982247_43982716

chr6_43971829_43971972

chr6_43972268_43972386

chr6_44149859_44149965

chr6_43983314_43983420

chr6_43973707_43973968

chr6_43974483_43974553

chr6_44150224_44150310

chr6_43980302_43980382

chr6_43980832_43980955

chr6_43981707_43981840

chr6_44153676_44153843

chr6_43981968_43982105

chr6_43988147_43988974

ULK4

chr3_41717728_41717861

chr3_41722772_41722823

chr3_41732733_41732789

chr3_41732943_41733064

WNK1

chr12_897479_897681

chr12_854953_855172

chr12_856734_857064

chr12_880361_881796

chr12_904228_907208

2 × paternally enriched

PHC3*

chr3_170136419_170136665

chr3_172872255_172882054

chr3_170145423_170145521

PIAS2

chr18_46829734_46829867

chr18_47046007_47046097

chr18_46890580_46891054

chr18_47046227_47046277

chr18_47054826_47054910

  1. Overlapping REs and their associated RNAs (RE-RNAs) are bolded. Asterisk (*) indicates the gene is a miRNA target listed in Table 4.
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