Table 1 Characterization of identified SPL genes in Avena sativa.

From: Differential expression and global analysis of miR156/SQUAMOSA promoter binding-like proteins (SPL) module in oat

Genea

Gene symbolb

CDS lengthc

Domaind

Deduced protein (aa)e

Chf

Genomic positiong

E value

Exonh

Predicted subcellular locationi

AsSPL1A

AVESA.00010b.r2.3AG0429080

2130

SBP

710

3A

150,194,572ā€“150,199,444

6.38eāˆ’23

11

Nucleus

AsSPL1C

AVESA.00010b.r2.3CG0485440

2592

SBP

864

3C

351,718,169ā€“351,724,905

2.64eāˆ’22

11

Nucleus

AsSPL1D*

AVESA.00001b.r3.3Dg0000777

2643

SBP

881

3D

128,038,037ā€“128,043,795

2.03eāˆ’23

11

Nucleus

AsSPL3A

AVESA.00010b.r2.1AG0030000

1659

SBP

553

1A

393,533,069ā€“393,538,332

1.30eāˆ’24

5

Nucleus

AsSPL3C

AVESA.00010b.r2.6CG1116620

1149

SBP

383

6C

142,489,501ā€“142,495,376

2.22eāˆ’24

3

Nucleus

AsSPL3D

AVESA.00010b.r2.2DG0387650

1647

SBP

549

2D

68,159,213ā€“68,163,589

1.22eāˆ’24

5

Nucleus

AsSPL6A

AVESA.00010b.r2.4AG0617780

2082

SBP

694

4A

321,184,138ā€“321,188,500

5.13eāˆ’24

9

Nucleus

AsSPL6C

AVESA.00010b.r2.7CG0713010

2238

SBP

746

7C

13,544,283ā€“13,550,860

6.94eāˆ’24

10

Nucleus

AsSPL6D*

AVESA.00001b.r3.4Dg0002398

2871

SBP

956

4D

342,088,718ā€“342,095,542

2.63eāˆ’49

11

Nucleus

AsSPL9A

AVESA.00010b.r2.1AG0053930

2553

SBP

851

1A

294,768,922ā€“294,779,215

1.18eāˆ’24

10

Nucleus

AsSPL9C

AVESA.00010b.r2.1CG0079470

2697

SBP

899

1C

418,196,430ā€“418,208,251

9.41eāˆ’26

11

Endoplasmic Reticulum

AsSPL9D

AVESA.00010b.r2.1DG0172650

2550

SBP

850

1D

276,378,031ā€“276,388,313

1.39eāˆ’25

10

Endoplasmic reticulum

AsSPL11A

AVESA.00010b.r2.6AG1006610

735

SBP

245

6A

1,679,912ā€“1,683,980

1.25eāˆ’20

3

Nucleus

AsSPL11C

AVESA.00010b.r2.6CG1110970

1005

SBP

335

6C

180,579,284ā€“180,582,815

1.28eāˆ’20

4

Nucleus

AsSPL11D

AVESA.00010b.r2.2DG0382760

1005

SBP

335

2D

90,934,967ā€“90,938,970

1.25eāˆ’20

4

Nucleus

AsSPL13A

AVESA.00010b.r2.2AG0198950

537

SBP

179

2A

24,988,625ā€“24,991,456

2.64eāˆ’18

2

Nucleus

AsSPL13C

AVESA.00010b.r2.2CG0276270

546

SBP

182

2C

113,571,449ā€“113,574,550

8.66eāˆ’19

2

Extracellular region

AsSPL13D

AVESA.00010b.r2.2DG0349760

537

SBP

179

2D

236,690,645ā€“236,693,452

4.80eāˆ’18

2

Nucleus

AsSPL15A

AVESA.00010b.r2.7AG1218390

3318

SBP

1106

7A

134,554,545ā€“134,560,310

1.03eāˆ’27

10

Chloroplast

AsSPL15C

AVESA.00010b.r2.5CG0931600

3342

SBP

1114

5C

15,625,436ā€“15,630,899

1.54eāˆ’27

10

Vacuoles

AsSPL15D

AVESA.00010b.r2.7DG1390040

3318

SBP

1106

7D

49,217,131ā€“49,222,850

4.47eāˆ’25

10

Chloroplast

AsSPL16A

AVESA.00010b.r2.5AG0853240

1317

SBP

439

5A

448,045,544ā€“448,052,002

7.06eāˆ’25

3

Nucleus

AsSPL16C

AVESA.00010b.r2.5CG0880720

1299

SBP

433

5C

507,845,009ā€“507,850,886

6.10eāˆ’25

3

Chloroplast

AsSPL16D

AVESA.00010b.r2.5DG0956210

1329

SBP

443

5D

401,441,491ā€“401,447,497

5.07eāˆ’25

3

Nucleus

AsSPL17A

AVESA.00010b.r2.5AG0851230

1167

SBP

389

5A

441,621,396ā€“441,625,091

6.81eāˆ’21

3

Nucleus

AsSPL17C

AVESA.00010b.r2.5CG0882850

1179

SBP

393

5C

499,731,050ā€“499,735,457

4.78eāˆ’22

3

Nucleus

AsSPL17D*

AVESA.00001b.r3.5Dg0002304

1155

SBP

384

5D

399,247,804ā€“399,251,340

2.16eāˆ’23

3

Nucleus

AsSPL23D

AVESA.00010b.r2.4DG0772040

1188

SBP

396

4D

337,532,631ā€“337,537,680

1.18eāˆ’13

3

Nucleus

  1. aNomenclature of oat SPLs in this study.
  2. bGene accession number in the oat database.
  3. cLength of coding sequence.
  4. dDomain prediction by SMART tool.
  5. eNumber of amino acids in the protein sequence.
  6. fChromosomal location of AsSPL genes.
  7. gChromosomal coordinates of AsSPL genes in the oat genome.
  8. hNumber of exons in AsSPL genes.
  9. iPredicted subcellular location of AsSPL genes.
  10. *AsSPLs identified in the Avena sativa cv. OT3098 V2 genome.
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