Table 2 Characteristics of putative pre-miRNA156 in oat.

From: Differential expression and global analysis of miR156/SQUAMOSA promoter binding-like proteins (SPL) module in oat

S. no

Group

Chr

miR156 Ids

Start

End

Str

LP

MFE (kcal/mol)

NM

1

I

2A

AsmiR156a-A

34,17,05,476

34,17,05,655

Reverse

180

āˆ’Ā 86

2

2

2C

AsmiR156a-C

45,92,20,714

45,92,20,907

Reverse

194

āˆ’Ā 101.8

2

3

2D

AsmiR156a-D

13,44,21,557

13,44,21,737

Reverse

181

āˆ’Ā 93.8

3

4

II

3A

AsmiR156b-A

7,22,01,197

7,22,01,377

Reverse

181

āˆ’Ā 68.6

1

5

3C

AsmiR156b-C

43,59,00,105

43,59,00,292

Forward

188

āˆ’Ā 85.3

3

6

3D

AsmiR156b-D

2,95,36,326

2,95,36,523

Reverse

198

āˆ’Ā 82.2

1

7

III

3A

AsmiR156c-A

7,22,01,601

7,22,01,805

Reverse

205

āˆ’Ā 53.9

4

8

3C

AsmiR156c-C

43,58,99,669

43,58,99,861

Forward

193

āˆ’Ā 76.1

2

9

3D

AsmiR156c-D

2,95,36,719

2,95,36,921

Reverse

203

āˆ’Ā 64.5

2

10

IV

5A

AsmiR156d-A

41,71,67,598

41,71,67,802

Reverse

205

āˆ’Ā 79.2

3

11

5C

AsmiR156d-C

45,37,82,523

45,37,82,730

Reverse

208

āˆ’Ā 72

2

12

5D

AsmiR156d-D

37,11,50,225

37,11,50,437

Forward

213

āˆ’Ā 88.1

3

13

V

6A

AsmiR156e-A

2,09,50,309

2,09,50,482

Reverse

174

āˆ’Ā 69.7

2

14

6C

AsmiR156e-C

18,97,18,886

18,97,19,071

Reverse

186

āˆ’Ā 70.1

2

15

2D

AsmiR156e-D

9,80,14,977

9,80,15,155

Reverse

179

āˆ’Ā 76.2

2

16

VI

6A

AsmiR156f-A

28,33,67,292

28,33,67,471

Forward

180

āˆ’Ā 90.5

3

17

6C

AsmiR156f-C

56,00,09,653

56,00,09,822

Forward

170

āˆ’Ā 89.1

3

18

6D

AsmiR156f-D

24,00,58,412

24,00,58,591

Forward

180

āˆ’Ā 91.6

3

19

VII

7A

AsmiR156g-A

19,45,68,262

19,45,68,444

Reverse

183

āˆ’Ā 57.7

2

20

5C

AsmiR156g-C

11,18,83,176

11,18,83,398

Reverse

223

āˆ’Ā 81.5

4

21

7D

AsmiR156g-D

10,50,94,730

10,50,94,993

Reverse

264

āˆ’Ā 102.8

2

  1. Chr chromosome, Str strand, LP length of pre-miRNA, MFE minimum fold energy, NM number of mismatches between predicted miRNA and miRNA.