Table 1 Indicators of genetic diversity and variation in the 25 Ethiopian and non-Ethiopian goat populations analysed in the study.

From: Anthropogenic events and responses to environmental stress are shaping the genomes of Ethiopian indigenous goats

Population

N

Π

HO

HE

DST

RoH number

RoH Length (Mb)

FHOM

FRoH

Mean

Mean

Mean

Mean

Mean ± SD

Mean ± SD

Mean ± SD

Mean ± SD

Abergelle

4

0.002

0.365

0.392

0.319

966 ± 72

184 ± 50.4

0.068 ± 0.03

0.063 ± 0.02

Afar

5

0.002

0.331

0.354

0.293

846 ± 142

162 ± 61.7

0.065 ± 0.04

0.056 ± 0.02

Agew

5

0.002

0.319

0.362

0.303

1004 ± 127

207 ± 66.8

0.117 ± 0.16

0.071 ± 0.02

Ambo

5

0.002

0.363

0.391

0.319

974 ± 123

200 ± 59.1

0.072 ± 0.03

0.068 ± 0.02

Arsi-Bale

5

0.002

0.339

0.359

0.290

958 ± 100

193 ± 41.6

0.056 ± 0.04

0.066 ± 0.01

Gonder

5

0.002

0.415

0.442

0.355

909 ± 25.8

155 ± 3.0

0.061 ± 0.02

0.053 ± 0.00

Gumuz

5

0.002

0.345

0.361

0.291

929 ± 54.8

171 ± 17.9

0.045 ± 0.02

0.059 ± 0.01

HHG

5

0.002

0.332

0.354

0.292

793 ± 32.4

131 ± 10.7

0.060 ± 0.03

0.045 ± 0.00

Keffa

5

0.002

0.344

0.363

0.293

1044 ± 65.4

199 ± 24.2

0.054 ± 0.03

0.068 ± 0.01

LESG

5

0.002

0.337

0.357

0.292

980 ± 114

172 ± 36.1

0.057 ± 0.03

0.059 ± 0.01

SESG

5

0.002

0.332

0.354

0.292

894 ± 90.4

168 ± 40.2

0.063 ± 0.04

0.058 ± 0.01

WGG

5

0.002

0.349

0.366

0.294

898 ± 137

147 ± 24.3

0.046 ± 0.03

0.050 ± 0.01

Mean

57

0.002

0.347

0.371

0.303

933 ± 90.3

174 ± 36.3

0.064 ± 0.04

0.059 ± 0.01

Boran

8

0.002

0.300

0.307

0.242

826 ± 125

130 ± 22.3

0.022 ± 0.03

0.044 ± 0.01

Moroccan

10

0.002

0.257

0.277

0.233

985 ± 474

205 ± 146

0.074 ± 0.08

0.070 ± 0.05

Mean

18

0.002

0.279

0.292

0.238

905 ± 299

167 ± 84.0

0.048 ± 0.06

0.057 ± 0.03

Bengal

7

0.002

0.292

0.320

0.261

729 ± 90.3

114 ± 17.1

0.088 ± 0.06

0.039 ± 0.01

Pakistan

10

0.002

0.226

0.299

0.259

1663 ± 811

410 ± 233

0.243 ± 0.11

0.140 ± 0.08

Iranian

10

0.002

0.233

0.260

0.228

641 ± 481

186 ± 203

0.102 ± 0.08

0.064 ± 0.07

Mean

27

0.002

0.250

0.293

0.249

1011 ± 461

237 ± 151

0.144 ± 0.08

0.081 ± 0.05

Italian

10

0.002

0.216

0.286

0.257

753 ± 339

144 ± 87.5

0.246 ± 0.16

0.05 ± 0.03

Bezoar

10

0.002

0.217

0.286

0.238

1608 ± 69.0

388 ± 133

0.242 ± 0.16

0.133 ± 0.04

  1. Π = Nucleotide diversity, HO = Observed heterozygosity, HE = Expected heterozygosity, DST = Genetic distance, FHOM and FROH = Genomic inbreeding coefficients, ROH length = length of Run of homozygosity (RoH), SD = Standard deviation, Mb = Mega base,
Back to article page