Table 2 Candidate regions revealed to be under selection and associated genes as identified by the ZHp approach in Afar, Arsi-Bale and Keffa Ethiopian indigenous goat populations.
Chromosome | Region (Mb) | Highest ZHp score | No. of candidate regions | Genes |
|---|---|---|---|---|
Afar | ||||
1 | 119.60–119.80 | − 7.3551 | 3 | |
7 | 21.60–21.90 | − 7.2470 | 5 | |
9 | 73.85–74.10 | − 8.2640 | 4 | NUP43, PCMT1 |
11 | 64.90–65.10 | − 7.3977 | 3 | TRNAC-ACA |
16 | 40.90–41.15 | − 7.9183 | 4 | MTOR, ANGPTL7, EXOSC10, SRM, MASP2, TARDBP |
18 | 22.95–23.15 | − 7.6813 | 3 | CHD9 |
18 | 36.45–36.80 | − 7.4372 | 6 | CTCF, CARMIL2, ACD, PARD6A, ENKD1, GFOD2, RANBP10, TSNAXIP1, CENPT, THAP11, NUTF2, EDC4, NRN1L, PSKH1, PSMB10, LCAT, SLC12A4, DPEP3, DPEP2, DDX28, DUS2, NFATC3 |
29 | 46.60–46.70 | − 7.0457 | 1 | ALDH3B1, NDUFS8, TCIRG1, CHKA |
Arsi-Bale | ||||
2 | 21.15–21.50 | − 7.8828 | 5 | |
12 | 10.05–10.25 | − 7.5186 | 3 | GPR183, GPR18, UBAC2 |
14 | 73.60–73.75 | − 7.0998 | 2 | SLA, TG |
90.20–90.40 | − 7.8080 | 3 | LMBRD1 | |
18 | 2.00–2.15 | − 7.0364 | 2 | |
20 | 51.70–51.95 | − 7.1316 | 4 | |
23 | 30.45–30.60 | − 7.6424 | 2 | SUPT3H |
Keffa | ||||
2 | 20.95–21.30 | − 7.2204 | 6 | |
5 | 18.05–18.60 | − 7.6087 | 2 | KITLG |
10 | 57.55–57.75 | − 7.4240 | 3 | OAZ2, ZNF609 |
13 | 61.70–61.95 | − 7.9138 | 4 | BPIFB4 |
18 | 26.10–27.00 | − 7.2406 | 6 | ADGRG5, CCDC102A, SLC12A3, NUP93, ADGRG1, HERPUD1, ADGRG3 |
36.00–37.20 | − 7.6909 | 18 | CBFB, C16orf70, B3GNT9, TRADD, HSF4, NOL3, KIAA0895L, EXOC3L1, E2F4, ELMO3, MIR328, TMEM208, FHOD1, SLC9A5, PLEKHG4, KCTD19, LRRC36, TPPP3, ZDHHC1, RANBP10, TSNAXIP1, CENPT, THAP11, NUTF2, EDC4, NRN1L, PSKH1, PSMB10, LCAT, SLC12A4, DPEP3, DPEP2, DDX28, DUS2, NFATC3, ESRP2, PLA2G15, SLC7A6, SLC7A6OS, PRMT7, SMPD3, ZFP90 | |
25 | 20.90–21.10 | − 7.1041 | 3 | SCNN1B, COG7 |
29 | 5.00–5.15 | − 7.1025 | 2 | |
