Table 3 Candidate regions under selection and associated genes as identified by the ZFST approach in Afar x Arsi-Bale, Afar x Keffa and Arsi-Bale x Keffa Ethiopian indigenous goat populations.
Chromosome | Region (Mb) | Highest ZFST score | No. of candidate regions | Genes |
|---|---|---|---|---|
Afar x Arsi-Bale | ||||
1 | 111.20–111.45 | 8.7369 | 4 | GMPS, SLC33A1 |
2 | 39.75–40.00 | 8.1483 | 4 | PLEKHM3, FZD5, CREB1 |
4 | 87.45–87.90 | 8.3029 | 7 | ABCB4, RUNDC3B |
5 | 101.50–102.10 | 9.5972 | 6 | FGF23, TIGAR, CCND2 |
12 | 13.65–13.95 | 8.7414 | 5 | |
35.15–35.30 | 9.1363 | 2 | ||
57.25–58.35 | 7.0350 | 3 | ALOX5AP, N4BP2L2, PDS5B | |
18 | 2.00–2.15 | 7.0405 | 2 | |
21 | 19.00–19.20 | 8.4123 | 3 | |
Afar x Keffa | ||||
8 | 10.70–10.85 | 7.7960 | 2 | SCARA5, ESCO2 |
9 | 73.85–74.35 | 10.7976 | 5 | LATS1, NUP43, PCMT1 |
10 | 57.45–57.75 | 8.4319 | 5 | ZNF609, OAZ2, PIF1 |
100.80–101.00 | 8.7218 | 3 | ||
12 | 13.70–13.95 | 7.8119 | 3 | |
15 | 45.95–46.15 | 8.9992 | 3 | SOX6 |
17 | 26.00–26.65 | 7.8414 | 4 | ULK1, PUS1, EP400, SNORA49, FBRSL1, LRCOL1, P2RX2 |
19 | 42.25–42.65 | 7.6954 | 4 | NAGLU, HSD17B1, COASY, MLX, PSMC3IP, RETREG3, TUBG1, CNTNAP1, EZH1, RAMP2, VPS25, WNK4, CNTD1, PSME3, AOC2, G6PC1 |
25 | 20.85–21.10 | 10.4511 | 4 | SCNN1B, COG7 |
Arsi-Bale x Keffa | ||||
12 | 57.20–57.40 | 7.6788 | 3 | |
18 | 37.00–37.25 | 7.0389 | 4 | SMPD3, ZFP90, CDH3, SA |
20 | 45.55–45.75 | 7.4978 | 3 | |
29 | 38.20–38.35 | 7.0217 | 2 | |
