Table 1 General features of the Amycolatopsis sp. BCA-696 genome assembly.
Category | Information |
|---|---|
Species | Amycolatopsis sp. |
Strain | BCA-696 |
Assembly details | |
Length (bp) | 9,059,528 |
N50 value | 9,059,528 |
Count of N's (percentage) | 6567 (0.07%) |
Count of N's per 100 kbp | 72.49 |
GC percentage | 68.75% |
Annotated genome features | |
Coding density percentage | 90.34% |
CDS count (mean length bp) | 8716 (939.02) |
tRNA count (mean length bp) | 55 (75.93) |
rRNA count (mean length bp) | 6 (1465.5) |
Repeat regions count (mean length bp) | 213 (333.66) |
CRISPR repeat (mean length bp) | 42 (29) |
CRISPR spacer count (mean length bp) | 40 (33.62) |
CRISPR array (mean length bp) | 2 (1281.5) |
Protein features | |
Number of proteins with functional assignments (percentage) | 5289 (60.66%) |
Number of hypothetical proteins (percentage) | 3427 (39.30%) |
Number of proteins with Gene Ontology assignments | 1329 |
Number of Proteins with subsystem assignments | 1546 |
Pangenome details | |
Number of core genes | 3627 |
Number of unique genes | 1423 |
