Table 3 Evolutionary selection on genes of influenza viruses.

From: The evolutionary features and roles of single nucleotide variants and charged amino acid mutations in influenza outbreaks during NPI period

Gene

Site

method

Statistic

Value

Pa

Selection

HA

174

FUBAR

BFb

2.578

0.381

174

MEME

MEME LogL

− 14.410

0.060

Positive

199

FUBAR

BF

18.287

0.058

Positive

199

MEME

MEME LogL

− 18.990

0.200

214

FUBAR

BF

73.196

0.008

Positive

214

MEME

MEME LogL

− 27.890

0.040

Positive

563

FUBAR

BF

42.425

0.016

Positive

563

MEME

MEME LogL

− 25.170

0.040

Positive

NA

73

FUBAR

BF

36.366

0.019

Positive

73

MEME

MEME LogL

− 22.870

0.020

Positive

384

FUBAR

BF

23.567

0.039

Positive

384

MEME

MEME LogL

− 17.740

0.170

  1. aThe threshold of p value is set to 0.1; bBF is Bayes Factor, limited by α < β.