Fig. 1
Comparison of phylogenetic resolution across genes with different evolutionary rates. (a) Maximum likelihood (ML) tree based on amino acid sequences of 80 orthopterans and ten polyneopteran outgroups using 517 genes from transcriptomes that show 1–9% mean pairwise distance (PD). (b) ML tree based on 990 genes with 10–19% mean PD. (c) ML tree based on 609 genes with 20–29% mean PD. (d) ML tree based on 262 genes with 30–45% mean P.D. For all of the trees, branches are colour-coded by superfamilies. Bootstrap values are shown as nodal support values, and where it is not shown, the value is 100. The arrows in (b–d) indicate clades whose phylogenetic placements change compared to the analysis with 517 genes with 1–9% mean PD.
