Table 1 Host DNA replication-related categories and examples of associated GO terms that exhibit enrichment in DR genes at 3 and 5 HPI.
From: Acanthamoeba polyphaga de novo transcriptome and its dynamics during Mimivirus infection
AP category enriched in DR genes | Associated GO terms (examples) | |
|---|---|---|
Name | Number | |
At both 3 and 5 HPI | ||
DNA-replication regulation | DNA replication-independent nucleosome organization | GO:0034724 |
DNA strand elongation | GO:0022616 | |
DNA-replication initiation | GO:0006270 | |
DNA-replication-related components | MCM complex | GO:0042555 |
Ctf18 RFC-like complex | GO:0031390 | |
DNA polymerase complex | GO:0042575 | |
DNA-replication preinitiation complex | GO:0031261 | |
DNA repair | Double-strand break repair via break-induced replication | GO:0000727 |
DNA ligation involved in DNA repair | GO:0051103 | |
Negative regulation of DNA recombination | GO:0045910 | |
Chromatin regulation | Chromatin silencing | GO:0006342 |
Chromosome condensation | GO:0030261 | |
Nucleosome assembly | GO:0006334 | |
Chromosome organization | Anaphase-promoting complex-dependent catabolic process | GO:0031145 |
Sister chromatid cohesion | GO:0007062 | |
Mitotic sister chromatid separation | GO:0051306 | |
Anaphase-promoting complex | Anaphase-promoting complex | GO:0005680 |
Nuclear ubiquitin ligase complex | GO:0000152 | |
Purine-nucleotide-related activity | Guanyl-nucleotide exchange factor activity | GO:0005085 |
Carboxypeptidase activity | GO:0004180 | |
Adenine nucleotide transmembrane transporter activity | GO:0000295 | |
Purine ribonucleotide transmembrane transporter activity | GO:0005346 | |
At 5 HPI only | ||
DNA replication origin binding | DNA replication origin binding | GO:0003688 |
Nucleotide-related processes | Adenine nucleotide transport | GO:0051503 |
Purine ribonucleotide transport | GO:0015868 | |
