Fig. 2
Genet identity was the largest driver of gene expression variance, with expression profile clusters identifying different baseline expressions among genets. (A) Principal component (PC) 1 (16% variance) and PC2 (14% variance) of the four genets with 95% confidence intervals. (B) PC 2 (14% variance) and PC3 (12% variance) of the four genets with 95% confidence intervals. (C) PC 3 (12% variance) and PC4 (10% variance) of the four genets with 95% confidence intervals. (D) The six identified clusters from degreport::degpattern of the significant LRT genes identified between the four genets. Each box identifies a cluster, with the x-axis showing the genet, and the y-axis the computed expression z-score for each genet. A value closer to 1 indicates higher expression, a value closer to 0 indicates neutral expression, and a value closer to − 1 indicates lower expression. (E) Inferred function identified from GO and KEGG enrichment analysis for each cluster. Cells with “—” indicate no inferred function due to low or no significantly enriched GO or KEGG terms. For (A)–(D); tan = genet CN2, blue = genet CN4, green = genet HS1, and gray = genet ML2.
