Table 4 Codon usage of coding genes in Phellinus igniarius.
From: Complete mitochondrial genome sequencing and phylogenetic analysis of Phellinus igniarius
Amino acid | Codon | Amount | RSCU | Amino acid | Codon | Amount | RSCU |
|---|---|---|---|---|---|---|---|
Ter | UAA | 41 | 1.6078 | Met | UUA | 4 | 0.0822 |
Ter | UAG | 10 | 0.3922 | Met | UUG | 2 | 0.0408 |
Ala | GCA | 196 | 1.1364 | Asn | AAC | 227 | 0.3656 |
Ala | GCC | 52 | 0.3016 | Asn | AAU | 1015 | 1.6344 |
Ala | GCG | 25 | 0.1448 | Pro | CCA | 151 | 1.1440 |
Ala | GCU | 417 | 2.4172 | Pro | CCC | 24 | 0.1820 |
Cys | UGC | 20 | 0.2564 | Pro | CCG | 26 | 0.1968 |
Cys | UGU | 136 | 1.7436 | Pro | CCU | 327 | 2.4772 |
Asp | GAC | 106 | 0.3136 | Gln | CAA | 367 | 1.7946 |
Asp | GAU | 570 | 1.6864 | Gln | CAG | 42 | 0.2054 |
Glu | GAA | 586 | 1.6936 | Arg | AGA | 330 | 4.1076 |
Glu | GAG | 106 | 0.3064 | Arg | AGG | 16 | 0.1992 |
Phe | UUC | 203 | 0.3596 | Arg | CGA | 50 | 0.6222 |
Phe | UUU | 926 | 1.6404 | Arg | CGC | 8 | 0.0996 |
Gly | GGA | 261 | 1.2124 | Arg | CGG | 19 | 0.2364 |
Gly | GGC | 40 | 0.186 | Arg | CGU | 59 | 0.7344 |
Gly | GGG | 66 | 0.3068 | Ser | AGC | 69 | 0.3078 |
Gly | GGU | 494 | 2.2952 | Ser | AGU | 371 | 1.6560 |
His | CAC | 77 | 0.4858 | Ser | UCA | 318 | 1.4196 |
His | CAU | 240 | 1.5142 | Ser | UCC | 52 | 0.2322 |
Ile | AUA | 606 | 1.1139 | Ser | UCG | 27 | 0.1206 |
Ile | AUC | 156 | 0.2868 | Ser | UCU | 507 | 2.2632 |
Ile | AUU | 870 | 1.5993 | Thr | ACA | 317 | 1.4540 |
Lys | AAA | 1294 | 1.8406 | Thr | ACC | 56 | 0.2568 |
Lys | AAG | 112 | 0.1594 | Thr | ACG | 19 | 0.0872 |
Leu | CUA | 208 | 0.6204 | Thr | ACU | 480 | 2.202 |
Leu | CUC | 22 | 0.0654 | Val | GUA | 355 | 1.4900 |
Leu | CUG | 48 | 0.1434 | Val | GUC | 36 | 0.1512 |
Leu | CUU | 225 | 0.6714 | Val | GUG | 99 | 0.4156 |
Leu | UUA | 1332 | 3.9744 | Val | GUU | 463 | 1.9432 |
Leu | UUG | 176 | 0.525 | Trp | UGA | 4 | 0.045 |
Met | AUA | 3 | 0.0618 | Trp | UGG | 174 | 1.9550 |
Met | AUC | 1 | 0.0204 | Tyr | UAC | 152 | 0.3556 |
Met | AUG | 280 | 5.7534 | Tyr | UAU | 703 | 1.6444 |
Met | AUU | 2 | 0.0408 |