Table 10 Robustness evaluation in terms of Recall, Precision, and F-score. False interactions are randomly added to protein pairs.

From: A multi-objective evolutionary algorithm for detecting protein complexes in PPI networks using gene ontology

Noise

Algorithm

Yeast-D1

Yeast-D2

Recall

Precision

F-score

Recall

Precision

F-score

10%

\(EA-CS\)

0.4545

0.5196

0.4844

0.3130

0.3201

0.3159

\(EA-CS_{mu}\)

0.5462

0.4965

0.5196

0.2769

0.2333

0.2529

\(\text {MOEA/D}\)

0.5407

0.5728

0.5362

0.2742

0.2828

0.2690

\(\text {MOEA/D}_{mu}\)

0.8231

0.6000

0.6835

0.4227

0.3079

0.3445

\(\text {MOEA}\text{- }GO_{FS-PTO}\)

0.9244

0.8766

0.8569

0.8833

0.7009

0.7579

\(EA-CS\)

0.3427

0.4534

0.3897

0.2388

0.2889

0.2607

20%

\(EA-CS_{mu}\)

0.4585

0.4440

0.4508

0.2053

0.1985

0.2014

\(\text {MOEA/D}\)

0.4680

0.5652

0.4812

0.2362

0.2814

0.2423

\(\text {MOEA/D}_{mu}\)

0.8154

0.6060

0.6870

0.3927

0.2997

0.3284

\(\text {MOEA}\text{- }GO_{FS-PTO}\)

0.9231

0.9069

0.8801

0.8713

0.7266

0.7607

\(EA-CS\)

0.2713

.04054

0.3242

0.1801

0.2552

0.2102

30%

\(EA-CS_{mu}\)

0.3726

0.4036

0.3867

0.1724

0.1920

0.1811

\(\text {MOEA/D}\)

0.4154

0.5643

0.4348

0.2012

0.2909

0.2161

\(\text {MOEA/D}_{mu}\)

0.8128

0.6160

0.6896

0.3867

0.3006

0.3261

\(\text {MOEA}\text{- }GO_{FS-PTO}\)

0.9179

0.9096

0.8737

0.8933

0.7178

0.7683

\(EA-CS\)

0.1890

0.3217

0.2375

0.1310

0.2134

0.1612

40%

\(EA-CS_{mu}\)

0.3145

0.3593

0.3350

0.1413

0.1812

0.1586

\(\text {MOEA/D}\)

0.3437

0.5218

0.3588

0.1610

0.2966

0.1767

\(\text {MOEA/D}_{mu}\)

0.8038

0.6012

0.6731

0.3853

0.211

0.3275

\(\text {MOEA}\text{- }GO_{FS-PTO}\)

0.9051

0.8465

0.8531

0.8820

0.6955

0.7633

\(EA-CS\)

0.1387

0.2669

0.1819

0.0942

0.1804

0.1229

50%

\(EA-CS_{mu}\)

0.2509

0.3097

0.2767

0.1076

0.1442

0.1224

\(\text {MOEA/D}\)

0.3005

0.4735

0.3067

0.1406

0.2803

0.1494

\(\text {MOEA/D}_{mu}\)

0.7795

0.6009

0.6654

0.3727

0.3641

0.3185

\(\text {MOEA}\text{- }GO_{FS-PTO}\)

0.8987

0.8336

0.8412

0.8933

0.7031

0.7663