Table 2 Binding free energy between RANKL monomer and flavonoids.

From: Computational exploration of Eucommia ulmoides flavonoids as potential RANKL inhibitors via molecular docking and dynamics simulations

Energy terms

Control group

Cyrtominetin

Quercetin

Syringetin

Genistein

Ombuin

Kaempferol

Eelec(kJ/mol)

−31.173±15.451

−122.668±14.010

−104.110±20.859

−137.866±20.612

−136.358±22.337

−51.541±11.696

−80.534±11.510

EvdW(kJ/mol)

−102.152±16.511

−85.806±19.310

−64.291±16.876

−87.556±14.752

−72.592±14.764

−52.015±14.495

−78.970±13.591

EMM(kJ/mol)

−133.325

−208.474

−168.401

−225.423

−208.950

−118.556

−159.504

Gpolar-sol(kJ/mol)

101.112±24.155

171.266±19.677

135.083±18.764

209.349±21.194

180.071±20.034

66.493±14.658

125.323±11.237

Gnonpolar-sol(kJ/mol)

−13.262±2.024

−12.997±0.853

−11.020±2.102

−13.656±0.930

−13.219±0.879

−8.374±2.694

−12.320±0.655

Gpolar(kJ/mol)

69.939

48.599

30.974

71.482

43.713

14.592

44.789

Gnonpolar(kJ/mol)

−115.414

−98.803

−75.311

−101.212

−85.811

−60.388

−91.290

Gbinding(kJ/mol)

−45.475±19.837

−50.205±15.845

−44.338±18.939

−29.730±10.821

−42.098±16.920

−45.796±13.605

−46.502±11.988