Table 2 Read alignment results.
From: Comparative assessment of the Sikun 2000 sequencing platform for whole genome sequencing
Platform | Sikun 2000 | Novaseq 6000 | Novaseq X |
|---|---|---|---|
Parameter | Average(std) | Average(std) | Average(std) |
Clean reads(M) | 610(0) | 604(0) | 604(0.4) |
Mapped rate(%) | 99.62(0.014) | 99.90(0.005) | 99.67(0.039) |
Coverage (%) | 92.01(0.31) | 92.018(0.31) | 92.01(0.31) |
4x coverage (%) | 91.64(0.26) | 91.46(0.17) | 91.51(0.19) |
10x coverage (%) | 88.13(0.45) | 86.53(0.75) | 87.49(0.86) |
Average depth (×) | 24.48(0.15) | 20.41(0.15) | 21.85(0.57) |
Dup rate (%) | 1.93(0.15) | 18.53(1.06) | 8.23(2.02) |
