Table 2 SMR analysis of eQTL, mQTL, and HIV.
From: Causal role of immunophenotypes in HIV-1 acquisition: insights from Mendelian randomization analysis
Gene, SNP | eQTL p | mQTL p | sum of eQTL and mQTL p value |
|---|---|---|---|
GABBR1, rs2747429 | 2.59E-04 | 6.26E-05 | 3.21E-04 |
CCR2, rs6441957 | 2.19E-03 | 5.95E-05 | 2.25E-03 |
CCND2, rs3217860 | 1.79E-03 | 1.02E-03 | 2.81E-03 |
SULF2, rs78055051 | 2.62E-03 | 2.21E-03 | 4.83E-03 |
ZYX, rs2242601 | 2.49E-03 | 2.37E-03 | 4.85E-03 |
GAA, rs12450199 | 5.84E-03 | 7.45E-03 | 1.33E-02 |
FES, rs4932373 | 9.81E-03 | 8.00E-03 | 1.78E-02 |
PNKP, rs2257103 | 9.35E-03 | 1.04E-02 | 1.97E-02 |
MDGA1, rs9349050 | 8.13E-03 | 1.20E-02 | 2.01E-02 |
MX1, rs459498 | 9.84E-03 | 1.33E-02 | 2.31E-02 |
MMP25, rs10431961 | 9.76E-03 | 1.37E-02 | 2.35E-02 |
NECAP2, rs12031735 | 1.38E-02 | 1.27E-02 | 2.65E-02 |
HMGN4, rs9467773 | 1.52E-02 | 1.46E-02 | 2.98E-02 |
AMH, rs4807216 | 2.20E-02 | 2.04E-02 | 4.24E-02 |
PRDX2, rs3786712 | 2.17E-02 | 2.10E-02 | 4.27E-02 |
FLYWCH1, rs9928222 | 1.93E-02 | 2.41E-02 | 4.34E-02 |
BMP8A, rs79473113 | 2.84E-02 | 2.55E-02 | 5.40E-02 |
ZNF514, rs11686534 | 2.30E-02 | 3.15E-02 | 5.46E-02 |
IGFBP2, rs16856445 | 2.40E-02 | 3.09E-02 | 5.49E-02 |
PLEKHG3, rs1998120 | 2.75E-02 | 2.84E-02 | 5.59E-02 |
C17orf97, rs7502594 | 2.51E-02 | 3.09E-02 | 5.60E-02 |
RBMS2, rs3782235 | 2.85E-02 | 2.82E-02 | 5.67E-02 |
OLFM4, rs17552047 | 2.74E-02 | 3.13E-02 | 5.87E-02 |
TMEM127, rs2301707 | 3.59E-02 | 2.79E-02 | 6.38E-02 |
IL15RA, rs8177637 | 2.86E-02 | 3.81E-02 | 6.67E-02 |
EPHB2, rs2043970 | 3.24E-02 | 3.53E-02 | 6.77E-02 |
S100A9, rs3014874 | 3.53E-02 | 3.51E-02 | 7.04E-02 |
GTF3A, rs1049302 | 4.12E-02 | 3.53E-02 | 7.65E-02 |
C1orf109, rs11264091 | 4.06E-02 | 3.69E-02 | 7.75E-02 |
RIN1, rs7950463 | 4.07E-02 | 3.99E-02 | 8.06E-02 |
ZNF155, rs62116613 | 4.11E-02 | 4.03E-02 | 8.14E-02 |
BTBD11, rs1991310 | 4.62E-02 | 3.76E-02 | 8.38E-02 |
ACCS, rs2074038 | 4.23E-02 | 4.27E-02 | 8.50E-02 |
DENND2C, rs114829951 | 4.50E-02 | 4.37E-02 | 8.87E-02 |
ANKLE1, rs35006574 | 4.91E-02 | 4.28E-02 | 9.18E-02 |
CCNA1, rs4941839 | 4.56E-02 | 4.66E-02 | 9.23E-02 |
DECR2, rs1204503 | 4.66E-02 | 4.72E-02 | 9.37E-02 |
LGALS12, rs1404504 | 4.94E-02 | 4.71E-02 | 9.65E-02 |
ANXA6, rs11750621 | 4.98E-02 | 4.78E-02 | 9.77E-02 |
