Table 12 Thermodynamic dataset of folding of 16S rRNA structures.
Strain | Structural Element | ∆G (kcal/mol) | Information |
|---|---|---|---|
Klebsiella pneumoniae strain ABSKSLAB01 | External loop | −4.10 | 6 ss bases & 3 closing helices |
Stack | −3.30 | External closing pair is C 1353-G 1396 | |
Multiloop | 1.50 | External closing pair is C 1354-G 1395 | |
Bulge loop | 0.50 | External closing pair is G 55-C 1342 | |
Interior loop | 2.40 | External closing pair is G 1359-C 1390 | |
Hairpin loop | 5.20 | Closing pair is C 1369-G 1381 | |
Klebsiella quasi-pneumoniae strain ABSKSLAB02 | External loop | −0.50 | 2 ss bases & 1 closing helices |
Stack | −1.30 | External closing pair is U 2-A 1283 | |
Multiloop | 0.70 | External closing pair is G 23-C 1263 12 ss bases & 5 closing helices | |
Bulge loop | 1.40 | External closing pair is U 9-A 1276 | |
Interior loop | 3.30 | External closing pair is G 1226-U 1256 | |
Streptomyces minutiscleroticus strain ABSKSLAB03 | External loop | −0.30 | 7 ss bases & 2 closing helices. |
Stack | −2.10 | External closing pair is U 1004-A 1025 | |
Multiloop | 1.90 | External closing pair is C 10-G 986 9 ss bases & 3 closing helices. | |
Bulge loop | 0.50 | External closing pair is G 642-C 924 | |
Interior loop | 3.00 | External closing pair is A 6-U 991 | |
Hairpin loop | 4.20 | Closing pair is C 1010-G 1019 | |
Streptomyces peucetius strain ABSKSLAB04 | External loop | −3.60 | 10 ss bases & 3 closing helices. |
Stack | −3.40 | External closing pair is g 896-c 905 | |
Multiloop | 0.70 | External closing pair is g 755-c 887 6 ss bases & 3 closing helices. | |
Bulge loop | 3.30 | External closing pair is c 841-g 861 | |
Interior loop | 1.70 | External closing pair is u 833-a 869 | |
Hairpin loop | 1.70 | Closing pair is g 898-c 903 |
