Table 1 Docking scores of the top ligands against the active sites of PPARα, β/δ, γ.

From: In silico and in vitro investigations reveal pan-PPAR agonist activity and anti-NAFLD efficacy of polydatin by modulating hepatic lipid-energy metabolism

  

2ZNN (PPARα)

3GZ9 (PPARβ/δ)

2ATH (PPARγ)

1

Demethyloleuropein

− 12.209

− 13.126

− 14.516

2

Eriodictyol-7-glucuronide

− 13.046

− 12.049

− 12.375

3

5-(3ʹ-hydroxyphenyl)-gamma-valerolactone-4ʹ-O-beta-d-glucuronide

− 11.424

− 12.379

− 12.023

4

cis-Resveratrol-3-O-glucuronide

− 12.112

− 11.013

− 11.942

5

Protocatechuic acid-3-O-glucuronide

− 9.976

− 10.762

− 11.877

6

6-Hydroxyluteolin 7-O-rhamnoside

− 12.186

− 12.662

− 11.819

7

(−)-Epicatechin 4ʹ-O-glucuronide

− 10.342

− 11.031

− 11.759

8

(−)-Epicatechin-5-O-glucuronide

− 11.871

− 12.064

− 11.710

10

Farnesol glucuronide

− 10.555

− 11.585

− 11.604

11

Luteolin 7-O-glucoside

− 11.508

− 11.104

− 11.603

12

3-(3?-Hydroxyphenyl)propionic acid-glucuronide

− 10.576

− 10.829

− 11.553

13

Dihydro-resveratrol-3-O-glucuronide

− 11.759

− 11.582

− 11.500

14

3-Phenylpropionic acid-4ʹ-O-glucuronide

− 8.032

− 10.783

− 11.475

15

Dihydro-piceid

− 11.392

− 11.898

− 11.460

16

cis-Resveratrol-4ʹ-O-glucuronide

− 11.034

− 11.849

− 11.444

17

Isourolithin A-3-glucuronide

− 10.556

− 9.287

− 11.428

18

Perillic acid glucuronide

− 8.686

− 10.543

− 11.198

19

Scutellarin

− 12.842

− 8.853

− 11.126

20

3-O-Caffeoylquinic acid

− 10.136

− 9.661

− 11.057

21

5-O-Caffeoylquinic acid

− 10.136

− 9.661

− 11.057

22

Neochlorogenic acid

− 10.136

− 9.661

− 11.057

23

Resveratrol-3-O-glucuronide

− 11.628

− 11.258

− 11.044

24

trans-resveratrol-5-O-glucuronide

− 11.628

− 11.258

− 11.044

25

(+)-Catechin 3-O-glucose

− 10.582

− 11.940

− 11.015

  1. The above table presents the top 25 molecules with high binding affinity with all three PPAR isoforms. A total list of 53 such compounds were identified, which have been compiled in Supplementary Table 1.