Table 2 Comparison of molecular optimization performance among MolFinder, REINVENT 4, and STELLA for the top 300 molecules in the final iteration/epoch. Performance metrics include average objective score, average pairwise Tanimoto similarity, and the number of clusters based on Sphere Exclusion algorithm with a similarity threshold of 0.3.
MolFinder | REINVENT 4 | STELLA | ||||
---|---|---|---|---|---|---|
Abl1 | p53 | Abl1 | p53 | Abl1 | p53 | |
Average objective score (Std.) ↓ | 2.47 (0.14) | 5.44 (0.37) | 3.45 (0.38) | 4.51 (0.34) | 2.42 (0.38) | 4.05 (0.25) |
Average pairwise similarity (Std.) ↓ | 0.33 (0.1) | 0.23 (0.1) | 0.31 (0.07) | 0.31 (0.07) | 0.28 (0.11) | 0.26 (0.1) |
Number of clusters ↑ | 7 | 27 | 11 | 21 | 18 | 20 |