Table 5 Cloned disease resistance gene homologues (CDRHs) identified in O. australiensis.

From: The Oryza australiensis genome reveals potential as a source of genes for rice improvement

Cloned resistance gene

Chromosome in O. sativa

Homolog ID

Chromosome in O. australiensis

Position (bp)

BPH14

3

g18778e

8

70,725,643

BPH17 = BPH15

4

g9829

g5963a

4

2

12,989,050

94,387,918

BPH30

4

g9773b

g9771c

4

4

6,502,789

6,493,820

BPH6

4

g9773b

g9771c

4

4

6,502,789

6,493,820

BPH29

6

g13789

6

332,651

BPH32 = BPH3

6

g13853

g5428

6

2

811,139

80,727,292

BPH1 = BPH10 = BPH18 = BPH21/BPH2 = BPH26/BPH9/BPH7

12

g18763d

8

70,497,397

Pi37

1

g18778e

8

70,725,643

Pi64

1

g2494

1

80,963,823

Pish/Pi35

1

g18778e

8

70,725,643

Pit

1

g22620f

11

60,928,299

Pib

2

g18763d

8

70,497,397

bsr-d1

3

g8179

3

35,610,037

pi21

4

g10138

4

41,854,052

Pi63

4

g11308g

4

60,566,963

Pi9/Pi2 = Piz-5/Piz-t/PigmR/Pizh/Pi50

6

g14583h

6

24,135,238

Pid2

6

g5963a

2

94,387,918

Pi25/Pid3/Pid3-i1

6

g20366

10

9,726,536

Pid4

6

g14583h

6

24,135,238

Pi36

8

g22575i

11

60,094,608

Pi5 = Pi3 = Pi5-1

9

g18778e

8

70,725,643

Pi56

9

g18778e

8

70,725,643

NLS-1

11

g23592

12

56,614,115

Pb1

11

g22564

11

59,775,819

Pb2

11

g22628

11

61,122,843

Pb3

11

g22620f

11

60,928,299

Pi65

11

g22647

g22649

11

11

61,521,424

61,710,179

Pia/Pi-CO39

11

g21945

g21947

11

11

8,906,283

8,914,911

Pik/Pik-m/Pik-p/Pi1/Pi7

11

g22457j

11

57,177,540

Pik-h = Pi54

11

g22526

11

58,855,054

Pita

12

g23241

12

22,287,743

Pita2 = Ptr

12

g23527

12

54,874,956

RYMV2

1

g3213

1

94,012,729

RYMV1

4

g10662

4

49,739,246

RYMV3

11

g22575i

11

60,094,608

STV11

11

g22199

11

48,878,289

tsv1

7

g16664

7

60,578,998

Xa1/Xa2 = Xa31(t)/Xa14/ Xa45(t)/CGS-Xo1

4

g11308g

4

60,566,963

xa5

5

g11815

5

646,045

xa13/OsSWEET11/Os8N3

8

g18737

8

70,114,010

Xa10

11

g22393k

11

55,921,351

Xa21

11

g267

1

2,980,453

Xa23

11

g22393k

11

55,921,351

Xa3 = Xa26

11

g23146

12

8,680,012

Xa4

11

g22648

11

61,692,971

xa41(t)/OsSWEET14/Os11N3

11

g22206

11

49,408,893

Xa46 (t)

11

g22390

11

55,889,500

Xa47(t)

11

g22457j

11

57,177,540

xa25/OsSWEET13/OsMtN3

12

g23351

12

45,463,545

  1. Letters that are the same indicate O. australiensis genes that correspond to multiple cloned disease resistance genes. "=" indicates identical alleles, "/" indicates different alleles at the same locus.
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