Table 3 Classification of the known cold tolerance genes based on the presence or absence of HLHs.

From: Haplotype shifts in the lipid-related OsGELP gene family underpin rice adaptation to high latitudes

Locus ID

Symbol

Reference

Note

Gene class

Os06g0157500

RFT1

Komiya et al., 2008

Rice Flowering-locus T 1

No-HLH

Os07g0261200

Ghd7

Xue et al., 2008

Heading date 7; Encodes a CCT domain protein

HLH

Os07g0695100

OsPRR37

Liu et al., 2015

Pseudo-response regulator 4

No-HLH

Os08g0174500

DTH8

Wei et al., 2010; Yan et al., 2011

Day to heading 8; Encodes the AP3 subunit of heme activator protein (HAP) complex

HLH

Os10g0463400

Ehd1

Doi et al., 2004

Heading date 1; Encodes a B-type response regulator

No-HLH

Os08g0105000

Ehd3

Matstubara et al., 2011

Heading date 3; encoding a plant homeodomain finger-containing protein

No-HLH

Os01g0922800

OsMADS51

Kim et al., 2007

MADS box gene51

No-HLH

  1. *Nd: data not available in SNP-Seek database.