Table 4 Classification of the known photoperiodic flowering genes based on the presence or absence of HLHs.

From: Haplotype shifts in the lipid-related OsGELP gene family underpin rice adaptation to high latitudes

Locus ID

Symbol

Reference

Note

Gene Class

Os01g0314800

OsLEA9

Lou et al., 2022

Late embryogenesis abundant protein 9

No-HLH

Os01g0699500

OsMKKK70

Mei et al., 2022

Mitogen activated protein kinase kinase kinase 70

No-HLH

Os02g0148100

OsMAPK3

Lou et al., 2022

Mitogen-activated Protein Kinase 3

HLH

Os02g0622100

LTG1

Lu et al., 2014

Low Temperature Growth 1

HLH

Os03g0285700

OsAPX1

Sato et al., 2011

Ascorbate peroxidase gene; induce ROS production

HLH

Os04g0131900

CTB2

Li et al., 2021

Cold tolerance at booting stage 2

No-HLH

Os04g0132500

CTB4a

Zhang et al., 2017

Cold tolerance at booting stage 4a

No-HLH

Os04g0517100

OsMYB4

Park et al., 2010

Myb transcription factor 4

No-HLH

Os04g0619300

Ctb1

Saito et al., 2010

Cold tolerance at the booting stage 1

No-HLH

Os07g0173400

qCTB7

Yang et al., 2023

Cold tolerance at the booting stage 7

No-HLH

Os09g0474000

bZIP73

Liu et al., 2018

bZIP transcription factor 73

No-HLH

Os10g0482200

LTT1

Xu et al., 2020

low-temperature tolerance 1

No-HLH

Os11g0686250

OsWRKY63

Zhang et al., 2022

WRKY transcription factor 63

*Nd

Os11g0483000

HAN1

Mao et al., 2019

Chilling Tolerance 1

No-HLH

  1. *Nd: data not available in SNP-Seek database.