Table 1 Comparison of genomic features of strain EP7T and Singulisphaera acidiphila MOB10T. Abbreviations: PKS: polyketide synthase, NRPS: non-ribosomal peptide synthetase, RiPP: ribosomally synthesized and post-translationally modified peptides, NAPAA: non-alpha poly-amino acid.
Characteristics | EP7T | Singulisphaera acidiphila MOB10T51 |
|---|---|---|
Genome size (bp) | 7,199,273 | 9,755,686 |
Plasmids | 4 | 3 |
DNA G + C content (%) | 66.7 | 62.2 |
Coding density (%) | 86.3 | 83.5 |
Completeness (Busco) (%) | 98.4 | 99.3 |
Genes (total) | 5,685 | 7,327 |
Genes per Mbp | 790 | 751 |
Protein-coding genes | 5,563 | 7,163 |
Protein-coding genes per Mbp | 773 | 734 |
Hypothetical proteins | 1,534 | 1,841 |
Hypothetical proteins (%) | 27.6 | 25.7 |
rRNAs (5S, 16S, 23S) | 4, 4, 4 | 8, 8, 8 |
tRNAs | 58 | 71 |
Carbohydrate-active enzymes | ||
Glycoside hydrolases | 19 | 35 |
Glycosyl transferases | 24 | 32 |
Polysaccharide lyases | 1 | 2 |
Carbohydrate esterases | 0 | 2 |
Carbohydrate-bind. modules | 3 | 5 |
Total | 47 | 76 |
CAZyme genes per Mbp | 6.5 | 7.8 |
AntiSMASH Biosynthetic gene clusters | ||
Terpenoid | 3 | 3 |
Type I PKS | 3 | 2 |
Type III PKS | 1 | 0 |
Mixed type I PKS-NRPS | 0 | 2 |
NRPS-like | 0 | 1 |
RiPP-like | 0 | 1 |
Phenazine | 0 | 1 |
NAPAA | 0 | 1 |
Total | 7 | 11 |
BGCs per Mbp | 1.0 | 1.1 |
