Fig. 2
From: Scalable long-read nanopore HPV16 amplicon-based whole-genome sequencing
Performance comparison of Clair3 and PEPPER against GATK. a A Venn diagram shows the overlap among the variant callers: PEPPER (brown), Clair3 (green), and the Truth-set GATK. b Overall concordance performance of Clair3 (blue) and PEPPER (green) relative to the Truth-set GATK, with F1-Score, Precision, and Recall on the x-axis and percentages on the y-axis. c SNP concordance metrics for Clair3 (blue) and PEPPER (brown), displaying F1-Score, Precision, and Recall on the x-axis and percentages on the y-axis. d INDEL concordance metrics for Clair3 (purple) and PEPPER (yellow), featuring F1-Score, Precision, and Recall on the x-axis and percentages on the y-axis.
