Table 2 Comparative evaluation of machine learning models using standard performance metrics: accuracy, precision, recall, F1 score, and MCC. The table presents quantitative measurements ranging from 0.746 to 1.000 across different architectures, demonstrating varying levels of predictive performance and classification effectiveness in binary classification tasks.

From: Deep learning decodes species-specific codon usage signatures in Brassica from coding sequences

Model Name

Accuracy

Precision

Recall

F1 Score

MCC

Deep Belief Neural Network

0.99995

0.99994

0.99994

0.99994

0.99993

Multilayer Perceptron Neural Network

1

1

1

1

1

Deep neural network (DNN) with L2 regularization and dropout

0.99982

0.99981

0.99981

0.99981

0.99975

Leaky ReLU Neural Network

0.99998

0.99998

0.99998

0.99998

0.99997

Shallow Neural Network

0.99995

0.99993

0.99995

0.99994

0.99994

Dropout Neural Network

0.99998

0.99998

0.99997

0.99998

0.99998

Radial Basis Function Neural Network

0.7464

0.85665

0.70124

0.74178

0.6673