Table 2 Summary of sequences and reads in each of the samples analyzed.

From: Vinclozolin and MEHP disrupt piRNA and miRNA expression and increase apoptosis in embryonic mouse ovaries

 

Different sequences

Total reads

Sample

 > 10 CPM

piRNA

miRNA

piRNA

miRNA

CP1

4414

4147

1546

9,586,379

5,958,797

CP2

4195

3972

1615

10,492,690

6,456,415

CP3

4341

4092

1558

10,471,937

6,114,518

CS1

3568

3448

2056

10,859,605

9,189,833

CS2

3388

3277

2076

12,560,256

10,856,423

CS3

3554

3438

2088

11,506,028

9,394,308

MP1

4547

4295

1577

10,032,952

6,071,586

MP2

4187

3902

1562

12,123,023

7,155,919

MP3

4121

3901

1523

8,989,120

5,487,817

MS1

3394

3285

2103

12,171,044

10,570,724

MS2

3407

3272

2034

12,325,921

10,475,588

MS3

3535

3418

2026

12,325,185

9,662,093

VP1

4412

4200

1485

9,186,636

5,278,739

VP2

4173

3961

1518

10,511,607

6,156,870

VP3

4171

3943

1638

9,560,033

6,148,031

VS1

3769

3611

2000

12,447,721

10,491,147

VS2

3355

3239

2055

12,216,250

10,610,400

VS3

3608

3484

2134

11,261,970

9,339,081

  1. Columns represent the mean between replicates of “ > 10CPM” (the sequences exceeding 10 counts per million), piRNAs (those identified as piRNAs) and miRNAs (those identified as miRNAs). The sample names can be made meaningful using the following code: C = control; M = exposure to MEHP; V = exposure to vinclozolin; P = PGCs; S = somatic cells; 1, 2, 3 = successive generations. An extended table can be accessed in Table S2. Note that some piRNAs can also be considered miRNAs.
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