Table 1 The number of miRNAs, isomiRs, and their interacting mRNAs across datasets.
From: New characteristics of MiRNA and IsomiR interactions with mRNA
Dataset | Sample information | miRNAs | isomiRs | mRNAs | miRNA–mRNA interactions | isomiR–mRNA interactions |
|---|---|---|---|---|---|---|
CLASH | 9 samples from Flp-In T-REx 293, female | 405 | 111 | 9219 | 63,126 | 15,379 |
CLEAR-CLIP | 12 samples from Huh-7.5, male | 262 | 152 | 2549 | 17,617 | 5540 |
qCLASH | 9 samples from TIVE-LTC, unknown gender | 543 | 431 | 15,549 | 2,397,074 | 104,048 |
eCLIP | 13 samples from HEK293T, female | 812 | 1466 | 17,039 | 1,776,264 | 221,029 |
Kozer | 3 samples from A375, female | 511 | 286 | 14,305 | 601,513 | 63,280 |
Fields | 21 samples from HCT116, male | 525 | 173 | 11,278 | 262,192 | 29,739 |
Total | 67 samples | 1233 | 1747 | 17,845 | 5,117,786 | 439,015 |
