Table 1 Percentage identity of Ethiopian isolates with selected reference strains.
Isolates/strains | Accession number | Species/ subspecies | Year | Country | Host | Sample | Chagni _ET_22 | Bishoftu _ET_22 | Suluta1 _ET_22 | Suluta2 _ET_22 | Gondar _ET_22 | Holeta _ET_22 | Bahrdar _ET_22 | Addis _ET_22 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Chagni_ET_22 | PQ096497 | 1b | 2022 | Ethiopia | Bovine | Swab | 100 | 60 | 55 | 58 | 60 | 60 | 61 | 65 |
Bishoftu_ET_22 | PQ096499 | 2a | 2022 | Ethiopia | Bovine | Swab | 60 | 100 | 100 | 95 | 98 | 99 | 99 | 86 |
Suluta1_ET_22 | PQ096503 | 2a | 2022 | Ethiopia | Bovine | Swab | 55 | 100 | 100 | 99 | 100 | 100 | 100 | 86 |
Suluta2_ET_22 | PQ096504 | 2a | 2022 | Ethiopia | Bovine | Swab | 58 | 95 | 95 | 100 | 97 | 96 | 96 | 85 |
Gondar_ET_22 | PQ096500 | 2a | 2022 | Ethiopia | Bovine | Serum | 60 | 98 | 100 | 97 | 100 | 98 | 98 | 85 |
Holeta_ET_22 | PQ096501 | 2a | 2022 | Ethiopia | Bovine | Swab | 60 | 99 | 100 | 96 | 96 | 100 | 98 | 85 |
Bahrdar_ET_22 | PQ096498 | 2a | 2022 | Ethiopia | Bovine | Swab | 61 | 99 | 100 | 96 | 98 | 98 | 100 | 85 |
Addis_ET_22 | PQ096502 | 2a | 2022 | Ethiopia | Bovine | Swab | 65 | 86 | 86 | 85 | 85 | 85 | 85 | 100 |
13,223 | JX848365 | 1b | 2010 | Argentina | Bovine | NA | 70 | 74 | 77 | 69 | 76 | 71 | 73 | 70 |
MRI7668 | OZ063999 | 1b | 2021 | UK | NA | NA | 68 | 77 | 77 | 73 | 76 | 75 | 76 | 69 |
MRI3300 | LT903357 | 1b | NA | UK | Bos taurus | NA | 69 | 73 | 77 | 69 | 75 | 71 | 72 | 69 |
MRI2816 | LT902920 | 1b | NA | UK | Bos taurus | NA | 70 | 73 | 77 | 69 | 76 | 71 | 73 | 70 |
MRI7519 | OZ063916 | 1b | 2019 | UK | NA | NA | 68 | 73 | 73 | 69 | 73 | 71 | 73 | 69 |
Egypt2018 | OK572619 | 1 | 2018 | Egypt | Cattle | Buffy coat | 70 | 75 | 75 | 71 | 74 | 75 | 74 | 69 |
278_15 | KY040373 | 1 | 2015 | Italiy | Bos taurus | Organ pools | 72 | 72 | 74 | 70 | 72 | 72 | 73 | 69 |
BSU1_ | GU085506 | 1 | 2008 | Egypt | Goat | NA | 67 | 74 | 73 | 69 | 72 | 72 | 73 | 66 |
CPA_0861_21 | OM812936 | 1b | 2021 | Mexico | Bos taurus | NA | 73 | 76 | 73 | 71 | 72 | 75 | 76 | 70 |
Tokachi_28 | OM238248 | 1 | NA | Japan | NA | NA | 72 | 76 | 73 | 71 | 72 | 75 | 75 | 70 |
NGR6 | KC252584 | 1 | 2012 | Mexico | NA | Featl serum | 70 | 76 | 74 | 72 | 73 | 75 | 76 | 70 |
Egy_Ismailia_2014 | KP127973 | 1b | NA | Egypt | Cattle | NA | 68 | 78 | 74 | 74 | 73 | 76 | 77 | 68 |
CB7 | KY114738 | 1 | 2015 | China | Yak | NA | 72 | 74 | 75 | 71 | 73 | 73 | 73 | 68 |
Egypt_Minya_AHRI_1_2018 | OK619590 | 1 | 2018 | Egypt | Cattle | NA | 66 | 77 | 73 | 73 | 71 | 77 | 76 | 70 |
Tiaret_2019 | MT157227 | 1 | 2019 | Algeria | Cattle | Serum | 67 | 77 | 73 | 71 | 73 | 74 | 75 | 67 |
Menofyia_2018 | MK127540 | 1 | 2018 | Egypt | Bovine | Serum | 65 | 73 | 75 | 71 | 72 | 71 | 73 | 69 |
NADL | NC_001461 | 1 | NA | NA | NA | NA | 67 | 73 | 76 | 73 | 74 | 76 | 76 | 68 |
J12_ZA | JN967734 | 1 | NA | SA | Bovine fetus | Serum | 68 | 75 | 76 | 71 | 72 | 75 | 74 | 68 |
Iman | AY690485 | 1 | NA | Egypt | NA | NA | 70 | 75 | 72 | 72 | 72 | 74 | 74 | 66 |
SMLK_10 | OQ411618 | 2a | 2016 | Mexico | Bovine | Serum | 61 | 70 | 76 | 71 | 71 | 72 | 73 | 69 |
LV92_38_13 | KM007128 | 2 | 2010 | Brazil | Bovine | NA | 67 | 76 | 80 | 73 | 78 | 75 | 76 | 72 |
98_922 | MN248478 | 2b | 1998 | Argentina | Bos taurus | Spleen | 66 | 75 | 78 | 71 | 77 | 73 | 76 | 72 |
MK558702 | MK558702 | 2b | 2014 | Argentina | Bos taurus | Leukocytes | 66 | 79 | 76 | 75 | 75 | 78 | 79 | 72 |
14_663_14 | MK558702 | 2b | 2014 | Argentina | Bos taurus | Leukocytes | 66 | 79 | 76 | 75 | 75 | 78 | 79 | 72 |
13_102 | MN248488 | 2b | 2013 | Argentina | Bos taurus | Serum | 65 | 76 | 76 | 73 | 75 | 75 | 76 | 71 |
98_530 | MK684368 | 2b | 1998 | Argentina | Bos taurus | Lymphnodes | 66 | 75 | 77 | 73 | 74 | 73 | 75 | 75 |
04_725 | MK684373 | 2b | 2004 | Argentina | Bos taurus | Spleen | 69 | 76 | 74 | 73 | 75 | 75 | 76 | 70 |
IW290670 | LC600229 | 2a | 2017 | Japan | Bos taurus | Serum | 60 | 80 | 77 | 73 | 75 | 79 | 78 | 73 |
IW240546 | LC600228 | 2a | 2018 | Japan | Bos taurus | Serum | 61 | 76 | 76 | 72 | 74 | 75 | 75 | 72 |
No_569 | LC600219 | 2a | 2017 | Japan | Bos taurus | WBC | 61 | 78 | 76 | 72 | 73 | 77 | 77 | 69 |
IW290704 | LC620262 | 2a | 2017 | Japan | Bos taurus | Serum | 61 | 75 | 76 | 68 | 73 | 74 | 74 | 70 |
IW240353 | LC600227 | 2a | 2012 | Japan | Bos taurus | Featal spleen | 62 | 78 | 75 | 71 | 73 | 77 | 76 | 72 |
IW291075 | LC600230 | 2a | 2018 | Japan | Bos taurus | Serum | 66 | 77 | 76 | 71 | 74 | 76 | 76 | 71 |
IW291038 | LC620264 | 2a | 2018 | Japan | Bos taurus | Serum | 65 | 77 | 75 | 70 | 73 | 76 | 75 | 70 |
GZ424 | KU351596 | 2a | 2019 | Spain | Bos taurus | NA | 66 | 75 | 75 | 72 | 72 | 73 | 75 | 71 |
XJ04 | NC_076032 | 2 | 2004 | China | Cattle | NA | 69 | 79 | 78 | 75 | 76 | 77 | 79 | 72 |
AQHY97BI23 | AB300678 | 2 | NA | USA | NA | NA | 65 | 78 | 77 | 74 | 75 | 77 | 77 | 72 |
NC_039237 | NC_039237 | 2 | NA | NA | NA | NA | 65 | 79 | 79 | 75 | 77 | 77 | 78 | 75 |
K1_2_CA | JN967735 | 2a | NA | Canada | Bovine fetus | NA | 65 | 78 | 77 | 74 | 75 | 76 | 77 | 74 |
AQHY91BI33 | AB300662 | 2 | NA | Canada | NA | NA | 64 | 78 | 77 | 74 | 76 | 77 | 77 | 74 |
CH693 | AF356505 | 2 | NA | Chile | NA | NA | 64 | 78 | 77 | 74 | 76 | 76 | 77 | 71 |
CH515 | AY671985 | 2 | NA | Chile | NA | NA | 64 | 77 | 77 | 75 | 75 | 75 | 76 | 73 |
Kim14 | MH396619 | 2a | 2018 | SK | Calves | NA | 66 | 78 | 76 | 74 | 73 | 76 | 76 | 73 |
Kim4 | MH396617 | 2a | 2018 | SK | Calves | NA | 67 | 75 | 75 | 74 | 75 | 76 | 75 | 71 |
Fukui_01_23 | LC860491 | 2 | 2023 | Japan | Bos taurus | NA | 65 | 78 | 78 | 74 | 76 | 76 | 76 | 72 |
37_Gr | EU327594 | 2 | NA | Slovakia | NA | NA | 64 | 78 | 77 | 74 | 76 | 76 | 76 | 73 |
12GKOR | GQ161919 | 2 | 2008 | SK | NA | NA | 64 | 79 | 77 | 74 | 75 | 77 | 77 | 70 |
11,285,406 (B) | FJ387318 | 2 | 2006 | USA | NA | NA | 65 | 78 | 81 | 74 | 78 | 77 | 77 | 74 |
