Table 2 The number of differentially expressed miRNA molecules detected. The number represents the count of molecules identified with the same Log2FC value. The number within the brackets represents the count of miRNA molecules, encompassing those that differ by a single nucleotide.
Comparison | ||||||||
|---|---|---|---|---|---|---|---|---|
SI vs. Apex | SII vs. SI | SIII vs. SII | SIV vs. SIII | SI vs. Leaf | SII vs. Leaf | SIII vs. Leaf | SIV vs. Leaf | |
Number of detected DEmiRNAs with miRDeep2 + edgeR | 6 (18) | 3 (12) | 9 (23) | 5 (18) | 33 (104) | 35 (109) | 38 (117) | 38 (97) |
Number of detected DEmiRNAs with ShortStack + edgeR | 3 | 0 | 1 | 4 | 25 | 20 | 38 | 33 |
Common | 0 | 0 | 0 | 1 | 10 | 7 | 10 | 7 |
